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Mark Transtrum
Mark Transtrum
Associate Professor of Physics at Brigham Young University
Verified email at byu.edu - Homepage
Title
Cited by
Cited by
Year
Perspective: Sloppiness and emergent theories in physics, biology, and beyond
MK Transtrum, BB Machta, KS Brown, BC Daniels, CR Myers, JP Sethna
The Journal of chemical physics 143 (1), 2015
3502015
Parameter space compression underlies emergent theories and predictive models
BB Machta, R Chachra, MK Transtrum, JP Sethna
Science 342 (6158), 604-607, 2013
3192013
Improvements to the Levenberg-Marquardt algorithm for nonlinear least-squares minimization
MK Transtrum, JP Sethna
arXiv preprint arXiv:1201.5885, 2012
2542012
Geometry of nonlinear least squares with applications to sloppy models and optimization
MK Transtrum, BB Machta, JP Sethna
Physical Review E 83 (3), 036701, 2011
2352011
Why are nonlinear fits to data so challenging?
MK Transtrum, BB Machta, JP Sethna
Physical review letters 104 (6), 060201, 2010
2312010
Model reduction by manifold boundaries
MK Transtrum, P Qiu
Physical review letters 113 (9), 098701, 2014
1412014
Superheating field of superconductors within Ginzburg-Landau theory
MK Transtrum, G Catelani, JP Sethna
Physical Review B 83 (9), 094505, 2011
1172011
Bridging mechanistic and phenomenological models of complex biological systems
MK Transtrum, P Qiu
PLoS computational biology 12 (5), e1004915, 2016
822016
Mechanisms of in vivo ribosome maintenance change in response to nutrient signals
AD Mathis, BC Naylor, RH Carson, E Evans, J Harwell, J Knecht, ...
Molecular & Cellular Proteomics 16 (2), 243-254, 2017
812017
Theoretical estimates of maximum fields in superconducting resonant radio frequency cavities: stability theory, disorder, and laminates
DB Liarte, S Posen, MK Transtrum, G Catelani, M Liepe, JP Sethna
Superconductor Science and Technology 30 (3), 033002, 2017
802017
The limitations of model-based experimental design and parameter estimation in sloppy systems
A White, M Tolman, HD Thames, HR Withers, KA Mason, MK Transtrum
PLoS computational biology 12 (12), e1005227, 2016
672016
Enzyme kinetics determined by single-injection isothermal titration calorimetry
MK Transtrum, LD Hansen, C Quinn
Methods 76, 194-200, 2015
562015
Maximizing the information learned from finite data selects a simple model
HH Mattingly, MK Transtrum, MC Abbott, BB Machta
Proceedings of the National Academy of Sciences 115 (8), 1760-1765, 2018
532018
Enzyme-catalyzed and binding reaction kinetics determined by titration calorimetry
LD Hansen, MK Transtrum, C Quinn, N Demarse
Biochimica et Biophysica Acta (BBA)-General Subjects 1860 (5), 957-966, 2016
532016
Use of the LQ model with large fraction sizes results in underestimation of isoeffect doses
T Sheu, J Molkentine, MK Transtrum, TA Buchholz, HR Withers, ...
Radiotherapy and Oncology 109 (1), 21-25, 2013
482013
Optimal experiment selection for parameter estimation in biological differential equation models
MK Transtrum, P Qiu
BMC bioinformatics 13, 1-12, 2012
472012
Sloppiness and the geometry of parameter space
BK Mannakee, AP Ragsdale, MK Transtrum, RN Gutenkunst
Uncertainty in Biology: A Computational Modeling Approach, 271-299, 2016
422016
Vortex nucleation in superconductors within time-dependent Ginzburg-Landau theory in two and three dimensions: Role of surface defects and material inhomogeneities
AR Pack, J Carlson, S Wadsworth, MK Transtrum
Physical Review B 101 (14), 144504, 2020
372020
Information geometry approach to verification of dynamic models in power systems
MK Transtrum, AT Sarić, AM Stanković
IEEE Transactions on Power Systems 33 (1), 440-450, 2017
352017
Measurement-directed reduction of dynamic models in power systems
MK Transtrum, AT Sarić, AM Stanković
IEEE Transactions on Power Systems 32 (3), 2243-2253, 2016
352016
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