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Joshua C Bowden
Joshua C Bowden
Verified email at csiro.au
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De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
BJ Haas, A Papanicolaou, M Yassour, M Grabherr, PD Blood, J Bowden, ...
Nature protocols 8 (8), 1494-1512, 2013
76122013
Anisotropy of collagen fibre alignment in bovine cartilage: comparison of polarised light microscopy and spatially resolved diffusion-tensor measurements
SK de Visser, JC Bowden, E Wentrup-Byrne, L Rintoul, T Bostrom, ...
Osteoarthritis and Cartilage 16 (6), 689-697, 2008
1412008
Diffusion tensor imaging of articular cartilage as a measure of tissue microstructure
R Meder, SK De Visser, JC Bowden, T Bostrom, JM Pope
Osteoarthritis and Cartilage 14 (9), 875-881, 2006
1352006
Reference generation and analysis with trinity
BJ Haas, A Papanicolaou, M Yassour, M Grabherr, D Philip, J Bowden, ...
Nat Protoc 8 (8), 1-43, 2014
912014
In vitro degradation of articular cartilage: does trypsin treatment produce consistent results?
HR Moody, CP Brown, JC Bowden, RW Crawford, DLS McElwain, ...
Journal of anatomy 209 (2), 259-267, 2006
622006
Risk-conscious correction of batch effects: maximising information extraction from high-throughput genomic datasets
Y Oytam, F Sobhanmanesh, K Duesing, JC Bowden, M Osmond-McLeod, ...
BMC bioinformatics 17, 1-17, 2016
532016
Diffuse reflectance near infrared spectroscopy can distinguish normal from enzymatically digested cartilage
CP Brown, JC Bowden, L Rintoul, R Meder, A Oloyede, RW Crawford
Physics in Medicine & Biology 54 (18), 5579, 2009
382009
Manycore Parallelism through OpenMP: High-Performance Scientific Computing with Xeon Phi
J Barker, J Bowden
International Workshop on OpenMP, 45-57, 2013
82013
A Spatial Modelling Approach for the Blending and Error Characterization of Remotely Sensed Soil Moisture Products
JB Grace Chiu, Eric Lehmann
Journal of Environmental Statistics 4 (9), 2013
82013
Dark-field tomography of an attenuating object using intrinsic x-ray speckle tracking
SJ Alloo, DM Paganin, KS Morgan, MJ Kitchen, AW Stevenson, SC Mayo, ...
Journal of Medical Imaging 9 (3), 031502-031502, 2022
62022
A balancing act in heterogeneous computing – Developing the AWRA-Landscape data assimilation system
LJ Perraud, J.-M., Collins, D., Bowden, J.C., Raupach, T., Manser, P.A ...
20th International Congress on Modelling and Simulation, 2013
4*2013
Application of the OpenCL API for implementation of the NIPALS algorithm for principal component analysis of large data sets
JC Bowden
2010 Sixth IEEE International Conference on e-Science Workshops, 25-30, 2010
32010
Speckle-based x-ray dark-field tomography of an attenuating object
SJ Alloo, DM Paganin, KS Morgan, MJ Kitchen, AW Stevenson, SC Mayo, ...
Developments in X-Ray Tomography XIII 11840, 78-90, 2021
22021
Eagle: multi-locus association mapping on a genome-wide scale made routine
AW George, A Verbyla, J Bowden
Bioinformatics, 2019
22019
Eagle for better genome-wide association mapping
AW George, A Verbyla, J Bowden
G3 11 (9), jkab204, 2021
12021
Evaluation of 3-aminopropanesulphonamide analogues of GABA as antagonists at GABAB receptors in peripheral and central preparations
J Ong, DIB Kerr, JC Bowden, RH Prager
European journal of pharmacology 367 (2-3), 207-211, 1999
11999
Speckle-Based X-ray Imaging: Dark-Field Tomography of a Phase Object
S Alloo, D Paganin, M Kitchen, AW Stevenson, SC Mayo, H Li, ...
2021
Speckle-Tracking Imaging at the Australian Synchrotron: Preliminary results from speckle-tracking studies at IMBL
K Pavlov, B Kennedy, S Mayo, J Bowden, T Li, D Paganin, A Maksimenko, ...
2019
Application of Principal Components Regression for Analysis of X-Ray Diffraction Images of Wood
JC Bowden, R Evans
PRINCIPAL COMPONENT ANALYSIS–ENGINEERING APPLICATIONS 10, 145, 2012
2012
OpenCL implementation of principal component analysis for large scale data analysis and benchmarking of heterogeneous clusters
J Bowden
EResearch Conference, Australia, 2011
2011
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Articles 1–20