Kumari Sonal Choudhary
Kumari Sonal Choudhary
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The Escherichia coli transcriptome mostly consists of independently regulated modules
AV Sastry, Y Gao, R Szubin, Y Hefner, S Xu, D Kim, KS Choudhary, ...
Nature communications 10 (1), 5536, 2019
Census of solo LuxR genes in prokaryotic genomes
S Hudaiberdiev, KS Choudhary, R Vera Alvarez, Z Gelencsér, B Ligeti, ...
Frontiers in cellular and infection microbiology 5, 20, 2015
Metabolic re-wiring of isogenic breast epithelial cell lines following epithelial to mesenchymal transition
S Halldorsson, N Rohatgi, M Magnusdottir, KS Choudhary, T Gudjonsson, ...
Cancer letters 396, 117-129, 2017
ComQXPA quorum sensing systems may not be unique to Bacillus subtilis: a census in prokaryotic genomes
I Dogsa, KS Choudhary, Z Marsetic, S Hudaiberdiev, R Vera, S Pongor, ...
PloS one 9 (5), e96122, 2014
EGFR signal-network reconstruction demonstrates metabolic crosstalk in EMT
KS Choudhary, N Rohatgi, S Halldorsson, E Briem, T Gudjonsson, ...
PLoS computational biology 12 (6), e1004924, 2016
Metabolic and genetic basis for auxotrophies in Gram-negative species
Y Seif, KS Choudhary, Y Hefner, A Anand, L Yang, BO Palsson
Proceedings of the National Academy of Sciences 117 (11), 6264-6273, 2020
Crowd Sourcing a New Paradigm for Interactome Driven Drug Target Identification in Mycobacterium tuberculosis
R Vashisht, AK Mondal, A Jain, A Shah, P Vishnoi, P Priyadarshini, ...
Plos one 7 (7), e39808, 2012
The Organization of the Quorum Sensing luxI/R Family Genes in Burkholderia
KS Choudhary, S Hudaiberdiev, Z Gelencsér, BG Coutinho, V Venturi, ...
International journal of molecular sciences 14 (7), 13727-13747, 2013
Classifying the Topology of AHL-Driven Quorum Sensing Circuits in Proteobacterial Genomes
Z Gelencsér, KS Choudhary, BG Coutinho, S Hudaiberdiev, B Galbáts, ...
Sensors, 2012
The Staphylococcus aureus Two-Component System AgrAC Displays Four Distinct Genomic Arrangements That Delineate Genomic Virulence Factor Signatures
KS Choudhary, N Mih, J Monk, E Kavvas, JT Yurkovich, G Sakoulas, ...
Frontiers in Microbiology 9, 1082, 2018
Elucidation of regulatory modes for five two-component systems in Escherichia coli reveals novel relationships
KS Choudhary, JA Kleinmanns, K Decker, AV Sastry, Y Gao, R Szubin, ...
Msystems 5 (6), 10.1128/msystems. 00980-20, 2020
Pangenome analytics reveal two-component systems as conserved targets in ESKAPEE pathogens
A Rajput, Y Seif, KS Choudhary, C Dalldorf, S Poudel, JM Monk, ...
Msystems 6 (1), 10.1128/msystems. 00981-20, 2021
Pseudogene repair driven by selection pressure applied in experimental evolution
A Anand, CA Olson, L Yang, AV Sastry, E Catoiu, KS Choudhary, ...
Nature microbiology 4 (3), 386-389, 2019
Chromosomal Arrangement of AHL-Driven Quorum Sensing Circuits in Pseudomonas
Z Gelencsér, B Galbáts, JF Gonzalez, KS Choudhary, S Hudaiberdiev, ...
ISRN Microbiology, 2011
LuxR solos from environmental fluorescent pseudomonads
C Bez, S Covaceuszach, I Bertani, KS Choudhary, V Venturi
Msphere 6 (2), 10.1128/msphere. 01322-20, 2021
The Bitome: digitized genomic features reveal fundamental genome organization
CR Lamoureux, KS Choudhary, ZA King, TE Sandberg, Y Gao, AV Sastry, ...
Nucleic Acids Research 48 (18), 10157-10163, 2020
Pangenome analytics reveal two-component systems as conserved targets in ESKAPEE pathogens. mSystems 6: e00981-20
A Rajput, Y Seif, KS Choudhary, C Dalldorf, S Poudel, JM Monk, ...
MetENP/MetENPWeb: An R package and web application for metabolomics enrichment and pathway analysis in metabolomics workbench
KS Choudhary, E Fahy, K Coakley, M Sud, MR Maurya, S Subramaniam
BioRxiv, 2020.11. 20.391912, 2020
A universal day zero infectious disease testing strategy leveraging CRISPR-based sample depletion and metagenomic sequencing
AP Chan, A Siddique, Y Desplat, Y Choi, S Ranganathan, KS Choudhary, ...
Medrxiv, 2022.05. 12.22274799, 2022
DEGenR: An R Shiny app for differential gene expression and enrichment analysis
KS Choudhary, AB Caldwell, S Subramaniam
zenodo, 2021
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