Malte Herold
Title
Cited by
Cited by
Year
Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential
L Wampach, A Heintz-Buschart, JV Fritz, J Ramiro-Garcia, J Habier, ...
Nature communications 9 (1), 1-14, 2018
1252018
IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses
S Narayanasamy, Y Jarosz, EEL Muller, A Heintz-Buschart, M Herold, ...
Genome biology 17 (1), 1-21, 2016
742016
Multi-omics Reveals the Lifestyle of the Acidophilic, Mineral-Oxidizing Model Species Leptospirillum ferriphilumT
S Christel, M Herold, S Bellenberg, M El Hajjami, A Buetti-Dinh, IV Pivkin, ...
Applied and environmental microbiology 84 (3), e02091-17, 2017
462017
Using metabolic networks to resolve ecological properties of microbiomes
EEL Muller, K Faust, S Widder, M Herold, SM Arbas, P Wilmes
Current Opinion in Systems Biology 8, 73-80, 2018
422018
Deep neural networks outperform human expert's capacity in characterizing bioleaching bacterial biofilm composition
A Buetti-Dinh, V Galli, S Bellenberg, O Ilie, M Herold, S Christel, ...
Biotechnology Reports 22, e00321, 2019
362019
Weak iron oxidation by Sulfobacillus thermosulfidooxidans maintains a favorable redox potential for chalcopyrite bioleaching
S Christel, M Herold, S Bellenberg, A Buetti-Dinh, M El Hajjami, IV Pivkin, ...
Frontiers in microbiology 9, 3059, 2018
262018
Evolving social contact patterns during the COVID-19 crisis in Luxembourg
A Latsuzbaia, M Herold, JP Bertemes, J Mossong
PloS one 15 (8), e0237128, 2020
172020
Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics
SM Arbas, S Narayanasamy, M Herold, LA Lebrun, MR Hoopmann, S Li, ...
Nature microbiology 6 (1), 123-135, 2021
122021
Automated microscopic analysis of metal sulfide colonization by acidophilic microorganisms
S Bellenberg, A Buetti-Dinh, V Galli, O Ilie, M Herold, S Christel, ...
Applied and environmental microbiology 84 (20), e01835-18, 2018
112018
Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance
M Herold, SM Arbas, S Narayanasamy, AR Sheik, LAK Kleine-Borgmann, ...
Nature communications 11 (1), 1-14, 2020
92020
First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ
EEL Muller, S Narayanasamy, M Zeimes, CC Laczny, LA Lebrun, ...
Standards in genomic sciences 12 (1), 1-8, 2017
82017
Identification, recovery, and refinement of hitherto undescribed population-level genomes from the human gastrointestinal tract
CC Laczny, EEL Muller, A Heintz-Buschart, M Herold, LA Lebrun, ...
Frontiers in microbiology 7, 884, 2016
82016
Reverse engineering directed gene regulatory networks from transcriptomics and proteomics data of biomining bacterial communities with approximate Bayesian computation and …
A Buetti-Dinh, M Herold, S Christel, M El Hajjami, F Delogu, O Ilie, ...
BMC bioinformatics 21 (1), 1-15, 2020
72020
Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential. Nat Commun. 2018
L Wampach, A Heintz-Buschart, JV Fritz, J Ramiro-Garcia, J Habier, ...
5
Systems biology of acidophile biofilms for efficient metal extraction
A Buetti-Dinh, M Herold, S Christel, M El Hajjami, S Bellenberg, O Ilie, ...
Scientific Data 7 (1), 1-10, 2020
32020
Challenges, Strategies, and Perspectives for Reference-Independent Longitudinal Multi-Omic Microbiome Studies
S Martínez Arbas, SB Busi, P Queirós, L De Nies, M Herold, P May, ...
Frontiers in Genetics 12, 858, 2021
22021
IMP: a pipeline for reproducible integrated metagenomic and metatranscriptomic analyses
S Narayanasamy, Y Jarosz, EEL Muller, CC Laczny, M Herold, A Kaysen, ...
bioRxiv, 039263, 2016
22016
Investigating Major Recurring Campylobacter jejuni Lineages in Luxembourg Using Four Core or Whole Genome Sequencing Typing Schemes
M Nennig, AK Llarena, M Herold, J Mossong, C Penny, S Losch, O Tresse, ...
Frontiers in cellular and infection microbiology 10, 818, 2021
12021
Integration of omics data for biotechnology-relevant microbial communities
M Herold
University of Luxembourg, Esch-sur-Alzette, Luxembourg, 2018
2018
Critical transitions in microbial communities: mobile genetic elements as drivers of the microbial community dynamics within activated sludge of wastewater treatment
S Martinez Arbas, S Narayanasamy, M Herold, L Lebrun, ND Hicks, ...
2018
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Articles 1–20