| QIIME allows analysis of high-throughput community sequencing data JG Caporaso, J Kuczynski, J Stombaugh, K Bittinger, FD Bushman, ... Nature methods 7 (5), 335-336, 2010 | 35239 | 2010 |
| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 15399 | 2019 |
| Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences MGI Langille, J Zaneveld, JG Caporaso, D McDonald, D Knights, ... Nature biotechnology 31 (9), 814-821, 2013 | 8629 | 2013 |
| PICRUSt2 for prediction of metagenome functions GM Douglas, VJ Maffei, JR Zaneveld, SN Yurgel, JR Brown, CM Taylor, ... Nature biotechnology 38 (6), 685-688, 2020 | 3928* | 2020 |
| A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature, 2017 | 2290 | 2017 |
| Normalization and microbial differential abundance strategies depend upon data characteristics S Weiss, ZZ Xu, S Peddada, A Amir, K Bittinger, A Gonzalez, C Lozupone, ... Microbiome 5, 1-18, 2017 | 1846 | 2017 |
| Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients N Fierer, CL Lauber, KS Ramirez, J Zaneveld, MA Bradford, R Knight The ISME journal 6 (5), 1007-1017, 2012 | 1713 | 2012 |
| Best practices for analysing microbiomes R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ... Nature Reviews Microbiology 16 (7), 410-422, 2018 | 1512 | 2018 |
| Bayesian community-wide culture-independent microbial source tracking D Knights, J Kuczynski, ES Charlson, J Zaneveld, MC Mozer, RG Collman, ... Nature methods 8 (9), 761-763, 2011 | 1499 | 2011 |
| Stress and stability: applying the Anna Karenina principle to animal microbiomes JR Zaneveld, R McMinds, R Vega Thurber Nature Microbiology, 2017 | 776 | 2017 |
| Overfishing and nutrient pollution interact with temperature to disrupt coral reefs down to microbial scales JR Zaneveld, DE Burkepile, AA Shantz, CE Pritchard, R McMinds, ... Nature communications 7 (1), 1-12, 2016 | 528 | 2016 |
| Chronic nutrient enrichment increases prevalence and severity of coral disease and bleaching RL Vega Thurber, DE Burkepile, C Fuchs, AA Shantz, R McMinds, ... Global change biology 20 (2), 544-554, 2014 | 526 | 2014 |
| Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny FJ Pollock, R McMinds, S Smith, DG Bourne, BL Willis, M Medina, ... Nature communications 9 (1), 4921, 2018 | 307 | 2018 |
| Normalization and microbial differential abundance strategies depend upon data characteristics. Microbiome 5: 27 S Weiss, ZZ Xu, S Peddada, A Amir, K Bittinger, A Gonzalez, C Lozupone, ... | 306 | 2017 |
| Natural volcanic CO2 seeps reveal future trajectories for host–microbial associations in corals and sponges KM Morrow, DG Bourne, C Humphrey, ES Botté, P Laffy, J Zaneveld, ... The ISME journal 9 (4), 894-908, 2015 | 272 | 2015 |
| Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins EE Hansen, CA Lozupone, FE Rey, M Wu, JL Guruge, A Narra, ... Proceedings of the National Academy of Sciences 108 (supplement_1), 4599-4606, 2011 | 260 | 2011 |
| Direct sequencing of the human microbiome readily reveals community differences J Kuczynski, EK Costello, DR Nemergut, J Zaneveld, CL Lauber, ... Genome biology 11, 1-9, 2010 | 198 | 2010 |
| Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts C Lozupone, K Faust, J Raes, JJ Faith, DN Frank, J Zaneveld, JI Gordon, ... Genome Research, 2012 | 193 | 2012 |
| One health relationships between human, animal, and environmental microbiomes: a mini-review P Trinh, JR Zaneveld, S Safranek, PM Rabinowitz Frontiers in public health 6, 235, 2018 | 190 | 2018 |
| Human-associated microbial signatures: examining their predictive value D Knights, LW Parfrey, J Zaneveld, C Lozupone, R Knight Cell host & microbe 10 (4), 292-296, 2011 | 171 | 2011 |
Rebecca Vega ThurberDistinguished Professor of Microbiology Oregon State UniversityVerified email at oregonstate.edu
