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Garegin Papoian
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Water in protein structure prediction
GA Papoian, J Ulander, MP Eastwood, Z Luthey-Schulten, PG Wolynes
Proceedings of the National Academy of Sciences 101 (10), 3352-3357, 2004
3912004
AWSEM-MD: protein structure prediction using coarse-grained physical potentials and bioinformatically based local structure biasing
A Davtyan, NP Schafer, W Zheng, C Clementi, PG Wolynes, GA Papoian
The Journal of Physical Chemistry B 116 (29), 8494-8503, 2012
3162012
Hypervalent Bonding in One, Two, and Three Dimensions: Extending the Zintl–Klemm Concept to Nonclassical Electron‐Rich Networks
G A. Papoian, R Hoffmann
Angewandte Chemie International Edition 39 (14), 2408-2448, 2000
3082000
A comparative theoretical study of the hydrogen, methyl, and ethyl chemisorption on the Pt (111) surface
G Papoian, JK NÝrskov, R Hoffmann
Journal of the American Chemical Society 122 (17), 4129-4144, 2000
2332000
Role of water mediated interactions in protein− protein recognition landscapes
GA Papoian, J Ulander, PG Wolynes
Journal of the American Chemical Society 125 (30), 9170-9178, 2003
2212003
Chemically accurate coarse graining of double-stranded DNA
A Savelyev, GA Papoian
Proceedings of the National Academy of Sciences 107 (47), 20340-20345, 2010
1922010
Electrostatic, steric, and hydration interactions favor Na+ condensation around DNA compared with K+
A Savelyev, GA Papoian
Journal of the American Chemical Society 128 (45), 14506-14518, 2006
1692006
Protein functional landscapes, dynamics, allostery: a tortuous path towards a universal theoretical framework
PI Zhuravlev, GA Papoian
Quarterly reviews of biophysics 43 (3), 295-332, 2010
1602010
The physics and bioinformatics of binding and folding—an energy landscape perspective
GA Papoian, PG Wolynes
Biopolymers: Original Research on Biomolecules 68 (3), 333-349, 2003
1432003
Predictive energy landscapes for protein–protein association
W Zheng, NP Schafer, A Davtyan, GA Papoian, PG Wolynes
Proceedings of the National Academy of Sciences 109 (47), 19244-19249, 2012
1232012
Exploring the free energy landscape of nucleosomes
B Zhang, W Zheng, GA Papoian, PG Wolynes
Journal of the American Chemical Society 138 (26), 8126-8133, 2016
1182016
Energy landscape analyses of disordered histone tails reveal special organization of their conformational dynamics
DA Potoyan, GA Papoian
Journal of the American Chemical Society 133 (19), 7405-7415, 2011
1162011
Recent successes in coarse‐grained modeling of DNA
DA Potoyan, A Savelyev, GA Papoian
Wiley Interdisciplinary Reviews: Computational Molecular Science 3 (1), 69-83, 2013
1142013
The stochastic dynamics of filopodial growth
Y Lan, GA Papoian
Biophysical journal 94 (10), 3839-3852, 2008
1132008
Concerted dihedral rotations give rise to internal friction in unfolded proteins
I Echeverria, DE Makarov, GA Papoian
Journal of the American Chemical Society 136 (24), 8708-8713, 2014
1092014
MEDYAN: mechanochemical simulations of contraction and polarity alignment in actomyosin networks
K Popov, J Komianos, GA Papoian
PLoS computational biology 12 (4), e1004877, 2016
1052016
Molecular renormalization group coarse-graining of polymer chains: application to double-stranded DNA
A Savelyev, GA Papoian
Biophysical Journal 96 (10), 4044-4052, 2009
1042009
Counterion atmosphere and hydration patterns near a nucleosome core particle
CK Materese, A Savelyev, GA Papoian
Journal of the American Chemical Society 131 (41), 15005-15013, 2009
1002009
AWSEM-IDP: a coarse-grained force field for intrinsically disordered proteins
H Wu, PG Wolynes, GA Papoian
The Journal of Physical Chemistry B 122 (49), 11115-11125, 2018
982018
Regulation of the H4 tail binding and folding landscapes via Lys-16 acetylation
DA Potoyan, GA Papoian
Proceedings of the National Academy of Sciences 109 (44), 17857-17862, 2012
952012
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