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Thomas L. Madden
Thomas L. Madden
Staff Scientist, NCBI, NLM, NIH
Verified email at ncbi.nlm.nih.gov - Homepage
Title
Cited by
Cited by
Year
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
SF Altschul, TL Madden, AA Schäffer, J Zhang, Z Zhang, W Miller, ...
Nucleic acids research 25 (17), 3389-3402, 1997
862821997
BLAST+: architecture and applications
C Camacho, G Coulouris, V Avagyan, N Ma, J Papadopoulos, K Bealer, ...
BMC bioinformatics 10, 1-9, 2009
166012009
Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction
J Ye, G Coulouris, I Zaretskaya, I Cutcutache, S Rozen, TL Madden
BMC bioinformatics 13, 1-11, 2012
64252012
Database resources of the national center for biotechnology information
EW Sayers, T Barrett, DA Benson, E Bolton, SH Bryant, K Canese, ...
Nucleic acids research 39 (suppl_1), D38-D51, 2010
4926*2010
NCBI BLAST: a better web interface
M Johnson, I Zaretskaya, Y Raytselis, Y Merezhuk, S McGinnis, ...
Nucleic acids research 36 (suppl_2), W5-W9, 2008
39812008
Database resources of the national center for biotechnology information
NCBI Resource Coordinators
Nucleic acids research 45 (D1), D12-D17, 2016
33792016
BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences
TA Tatusova, TL Madden
FEMS microbiology letters 174 (2), 247-250, 1999
24091999
BLAST: at the core of a powerful and diverse set of sequence analysis tools
S McGinnis, TL Madden
Nucleic acids research 32 (suppl_2), W20-W25, 2004
22432004
Database resources of the national center for biotechnology information
DL Wheeler, T Barrett, DA Benson, SH Bryant, K Canese, V Chetvernin, ...
Nucleic acids research 36 (suppl_1), D13-D21, 2007
22272007
Database resources of the national center for biotechnology information
Nucleic acids research 46 (D1), D8-D13, 2017
1776*2017
Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements
AA Schäffer, L Aravind, TL Madden, S Shavirin, JL Spouge, YI Wolf, ...
Nucleic acids research 29 (14), 2994-3005, 2001
16512001
Database indexing for production MegaBLAST searches
A Morgulis, G Coulouris, Y Raytselis, TL Madden, R Agarwala, ...
Bioinformatics 24 (16), 1757-1764, 2008
14042008
BLAST: a more efficient report with usability improvements
GM Boratyn, C Camacho, PS Cooper, G Coulouris, A Fong, N Ma, ...
Nucleic acids research 41 (W1), W29-W33, 2013
11602013
The BLAST Sequence Analysis Tool
J McEntyre, J Ostell, T Madden
National Center for Biotechnology Information (US), 2002
1152*2002
IgBLAST: an immunoglobulin variable domain sequence analysis tool
J Ye, N Ma, TL Madden, JM Ostell
Nucleic acids research 41 (W1), W34-W40, 2013
11222013
Database resources of the National Center for Biotechnology
DL Wheeler, DM Church, S Federhen, AE Lash, TL Madden, JU Pontius, ...
Nucleic acids research 31 (1), 28-33, 2003
10922003
Database resources of the national center for biotechnology information
DL Wheeler, T Barrett, DA Benson, SH Bryant, K Canese, V Chetvernin, ...
Nucleic acids research 34 (suppl_1), D173-D180, 2006
885*2006
Domain enhanced lookup time accelerated BLAST
GM Boratyn, AA Schäffer, R Agarwala, SF Altschul, DJ Lipman, ...
Biology direct 7, 1-14, 2012
8782012
Database resources of the national center for biotechnology information
NR Coordinators
Nucleic acids research 41 (Database issue), D8, 2013
8302013
Database resources of the national center for biotechnology information
NR Coordinators
Nucleic acids research 41 (D1), D8-D20, 2012
8302012
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