Thomas L. Madden

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Alejandro SchafferComputer Scientist, National Institutes of HealthVerified email at nih.gov
Webb MillerPenn State University, UC Santa Barbara, ArizonaVerified email at bx.psu.edu
Stephen AltschulNCBI NLM NIHVerified email at nih.gov
Christiam E. CamachoNational Center for Biotechnology Information, NLM, NIHVerified email at nih.gov
Jinghui ZhangSt Jude Children's Research HospitalVerified email at stjude.org
Lynn SchrimlAssistant Professor, Department of Epidemiology and Public Health, Institute for Genome Sciences, University of Maryland School Verified email at som.umaryland.edu
Gregory SchulerNational Institutes of HealthVerified email at ncbi.nlm.nih.gov
Deanna ChurchExecutive in Residence, General InceptionVerified email at generalinception.com
Eric W. SayersNational Center for Biotechnology Information, NLM, NIHVerified email at ncbi.nlm.nih.gov
Aron Marchler-BauerStaff Scientist, National Center for Biotechnology InformationVerified email at ncbi.nlm.nih.gov
Kim D. PruittInformation Engineering Branch, National Center for Biotechnology Information, National Library ofVerified email at ncbi.nlm.nih.gov
Zhiyong LuDeputy Director for Literature Search, NCBI; Senior Investigator, NLM; Adjunct Professor of CS, UIUCVerified email at nih.gov
Sunghwan KimStaff Scientist, National Institutes of HealthVerified email at ncbi.nlm.nih.gov
Evan BoltonProgram Head of Chemistry, National Center for Biotechnology InformationVerified email at ncbi.nlm.nih.gov
Steven G. RozenDuke University School of MedicineVerified email at duke.edu
Ioana CutcutacheClinical Bioinformatics Lead, UCB PharmaVerified email at ucb.com
Eugene KooninSenior Investigator, NCBI, NIHVerified email at ncbi.nlm.nih.gov
John L SpougeSenior Investigator, National Institutes of HealthVerified email at nih.gov
Aravind LSenior Investigator, National Institutes of HealthVerified email at mail.nih.gov
Steve SherryDirector, National Center for Biotechnology Information, National Library of Medicine, National Institutes of HealthVerified email at nih.gov

Thomas L. Madden

Staff Scientist, NCBI, NLM, NIH

Verified email at ncbi.nlm.nih.gov - Homepage

Bioinformatics Sequence Alignment


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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs SF Altschul, TL Madden, AA Schäffer, J Zhang, Z Zhang, W Miller, ... Nucleic acids research 25 (17), 3389-3402, 1997	87824	1997
BLAST+: architecture and applications C Camacho, G Coulouris, V Avagyan, N Ma, J Papadopoulos, K Bealer, ... BMC bioinformatics 10, 1-9, 2009	17041	2009
Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction J Ye, G Coulouris, I Zaretskaya, I Cutcutache, S Rozen, TL Madden BMC bioinformatics 13, 1-11, 2012	6568	2012
Database resources of the national center for biotechnology information EW Sayers, EE Bolton, JR Brister, K Canese, J Chan, DC Comeau, ... Nucleic acids research 50 (D1), D20-D26, 2022	6534*	2022
NCBI BLAST: a better web interface M Johnson, I Zaretskaya, Y Raytselis, Y Merezhuk, S McGinnis, ... Nucleic acids research 36 (suppl_2), W5-W9, 2008	4069	2008
BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences TA Tatusova, TL Madden FEMS microbiology letters 174 (2), 247-250, 1999	2413	1999
BLAST: at the core of a powerful and diverse set of sequence analysis tools S McGinnis, TL Madden Nucleic acids research 32 (suppl_2), W20-W25, 2004	2280	2004
Database resources of the national center for biotechnology information DL Wheeler, T Barrett, DA Benson, SH Bryant, K Canese, V Chetvernin, ... Nucleic acids research 36 (suppl_1), D13-D21, 2007	2214	2007
Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements AA Schäffer, L Aravind, TL Madden, S Shavirin, JL Spouge, YI Wolf, ... Nucleic acids research 29 (14), 2994-3005, 2001	1650	2001
Database indexing for production MegaBLAST searches A Morgulis, G Coulouris, Y Raytselis, TL Madden, R Agarwala, ... Bioinformatics 24 (16), 1757-1764, 2008	1428	2008
The BLAST Sequence Analysis Tool J McEntyre, J Ostell, T Madden National Center for Biotechnology Information (US), 2002	1343*	2002
Database resources of the national center for biotechnology information Nucleic acids research 46 (D1), D8-D13, 2017	1318*	2017
BLAST: a more efficient report with usability improvements GM Boratyn, C Camacho, PS Cooper, G Coulouris, A Fong, N Ma, ... Nucleic acids research 41 (W1), W29-W33, 2013	1203	2013
IgBLAST: an immunoglobulin variable domain sequence analysis tool J Ye, N Ma, TL Madden, JM Ostell Nucleic acids research 41 (W1), W34-W40, 2013	1150	2013
Database resources of the National Center for Biotechnology DL Wheeler, DM Church, S Federhen, AE Lash, TL Madden, JU Pontius, ... Nucleic acids research 31 (1), 28-33, 2003	1116	2003
Database resources of the national center for biotechnology information NCBI Resource Coordinators Nucleic acids research 45 (D1), D12-D17, 2016	1114	2016
Database resources of the national center for biotechnology information DL Wheeler, T Barrett, DA Benson, SH Bryant, K Canese, V Chetvernin, ... Nucleic acids research 34 (suppl_1), D173-D180, 2006	925*	2006
Domain enhanced lookup time accelerated BLAST GM Boratyn, AA Schäffer, R Agarwala, SF Altschul, DJ Lipman, ... Biology direct 7, 1-14, 2012	888	2012
Database resources of the national center for biotechnology information NR Coordinators Nucleic acids research 41 (Database issue), D8, 2013	832	2013
[9] Applications of network BLAST server TL Madden, RL Tatusov, J Zhang Methods in enzymology 266, 131-141, 1996	683	1996

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