|Cell illustrator 4.0: a computational platform for systems biology|
M Nagasaki, A Saito, E Jeong, C Li, K Kojima, E Ikeda, S Miyano
In silico biology 10 (1-2), 5-26, 2010
|Modelling and simulation of signal transductions in an apoptosis pathway by using timed Petri nets|
L Chen, G Qi-Wei, M Nakata, H Matsuno, S Miyano
Journal of biosciences 32, 113-127, 2007
|Simulation-based model checking approach to cell fate specification during Caenorhabditis elegans vulval development by hybrid functional Petri net with extension|
C Li, M Nagasaki, K Ueno, S Miyano
BMC systems biology 3 (1), 1-35, 2009
|Petri net based descriptions for systematic understanding of biological pathways|
H Matsuno, C Li, S Miyano
IEICE Transactions on Fundamentals of Electronics, Communications and …, 2006
|Structural modeling and analysis of signaling pathways based on Petri nets|
C Li, S Suzuki, QW Ge, M Nakata, H Matsuno, S Miyano
Journal of bioinformatics and computational biology 4 (05), 1119-1140, 2006
|Whole exome sequencing identified a novel DAG1 mutation in a patient with rare, mild and late age of onset muscular dystrophy‐dystroglycanopathy|
Y Dai, S Liang, X Dong, Y Zhao, H Ren, Y Guan, H Yin, C Li, L Chen, ...
Journal of cellular and molecular medicine 23 (2), 811-818, 2019
|Whole exome sequencing identified a homozygous novel variant in CEP290 gene causes Meckel syndrome|
R Zhang, S Chen, P Han, F Chen, S Kuang, Z Meng, J Liu, R Sun, Z Wang, ...
Journal of Cellular and Molecular Medicine 24 (2), 1906-1916, 2020
|Identification and functional characterization of mutations in LPL gene causing severe hypertriglyceridaemia and acute pancreatitis|
P Han, G Wei, K Cai, X Xiang, WP Deng, YB Li, S Kuang, Z Dong, ...
Journal of Cellular and Molecular Medicine 24 (2), 1286-1299, 2020
|Online model checking approach based parameter estimation to a neuronal fate decision simulation model in Caenorhabditis elegans with hybrid functional Petri net with extension|
C Li, M Nagasaki, CH Koh, S Miyano
Molecular Biosystems 7 (5), 1576-1592, 2011
|Systematic reconstruction of TRANSPATH data into cell system markup language|
M Nagasaki, A Saito, C Li, E Jeong, S Miyano
BMC Systems Biology 2 (1), 1-17, 2008
|A MYBL2 complex for RRM2 transactivation and the synthetic effect of MYBL2 knockdown with WEE1 inhibition against colorectal cancer|
Q Liu, L Guo, H Qi, M Lou, R Wang, B Hai, K Xu, L Zhu, Y Ding, C Li, L Xie, ...
Cell Death & Disease 12 (7), 683, 2021
|STAT3 activates MSK1-mediated histone H3 phosphorylation to promote NFAT signaling in gastric carcinogenesis|
H Qi, Z Yang, C Dai, R Wang, X Ke, S Zhang, X Xiang, K Chen, C Li, J Luo, ...
Oncogenesis 9 (2), 15, 2020
|In silico analysis of all point mutations on the 2B domain of K5/K14 causing epidermolysis bullosa simplex: a genotype–phenotype correlation|
S Banerjee, Q Wu, P Yu, M Qi, C Li
Molecular Biosystems 10 (10), 2567-2577, 2014
|Integrative analysis reveals across-cancer expression patterns and clinical relevance of ribonucleotide reductase in human cancers|
Y Ding, T Zhong, M Wang, X Xiang, G Ren, Z Jia, Q Lin, Q Liu, J Dong, ...
Frontiers in oncology 9, 956, 2019
|MIRACH: efficient model checker for quantitative biological pathway models|
CH Koh, M Nagasaki, A Saito, C Li, L Wong, S Miyano
Bioinformatics 27 (5), 734-735, 2011
|Lipidomic Alterations and PPARα Activation Induced by Resveratrol Lead to Reduction in Lesion Size in Endometriosis Models|
Z Chen, C Wang, C Lin, L Zhang, H Zheng, Y Zhou, X Li, C Li, X Zhang, ...
Oxidative medicine and cellular longevity 2021, 1-21, 2021
|PHC1 maintains pluripotency by organizing genome-wide chromatin interactions of the Nanog locus|
L Chen, Q Tong, X Chen, P Jiang, H Yu, Q Zhao, L Sun, C Liu, B Gu, ...
Nature Communications 12 (1), 2829, 2021
|Drosophila Pif1A is essential for spermatogenesis and is the homolog of human CCDC157, a gene associated with idiopathic NOA|
X Yuan, H Zheng, Y Su, P Guo, X Zhang, Q Zhao, W Ge, C Li, Y Xi, ...
Cell Death & Disease 10 (2), 125, 2019
|Targeted Next Generation Sequencing Revealed a Novel Homozygous Loss-of-Function Mutation in ILDR1 Gene Causes Autosomal Recessive Nonsyndromic …|
J An, J Yang, Y Wang, Y Wang, B Xu, G Xie, S Chai, X Liu, S Xu, X Wen, ...
Frontiers in Genetics 10, 1, 2019
|On determining firing delay time of transitions for Petri net based signaling pathways by introducing stochastic decision rules|
Y Miwa, C Li, QW Ge, H Matsuno, S Miyano
In Silico Biology 10 (1-2), 49-66, 2010