Paul D Thomas
Paul D Thomas
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Cited by
Cited by
The sequence of the human genome
JC Venter, MD Adams, EW Myers, PW Li, RJ Mural, GG Sutton, HO Smith, ...
science 291 (5507), 1304-1351, 2001
The gene ontology resource: 20 years and still GOing strong
Gene Ontology Consortium
Nucleic acids research 47 (D1), D330-D338, 2019
PANTHER: a library of protein families and subfamilies indexed by function
PD Thomas, MJ Campbell, A Kejariwal, H Mi, B Karlak, R Daverman, ...
Genome research 13 (9), 2129-2141, 2003
Gene ontology consortium: going forward
Gene Ontology Consortium
Nucleic acids research 43 (D1), D1049-D1056, 2015
PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools
H Mi, A Muruganujan, D Ebert, X Huang, PD Thomas
Nucleic acids research 47 (D1), D419-D426, 2019
Large-scale gene function analysis with the PANTHER classification system
H Mi, A Muruganujan, JT Casagrande, PD Thomas
Nature protocols 8 (8), 1551-1566, 2013
The Gene Ontology resource: enriching a GOld mine
S Carbon, E Douglass, BM Good, DR Unni, NL Harris, CJ Mungall, ...
Nucleic Acids Research, 0
PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements
H Mi, X Huang, A Muruganujan, H Tang, C Mills, D Kang, PD Thomas
Nucleic acids research 45 (D1), D183-D189, 2017
InterPro: the integrative protein signature database
S Hunter, R Apweiler, TK Attwood, A Bairoch, A Bateman, D Binns, P Bork, ...
Nucleic acids research 37 (suppl_1), D211-D215, 2009
Principles of protein folding—a perspective from simple exact models
KA Dill, S Bromberg, K Yue, HS Chan, KM Ftebig, DP Yee, PD Thomas
Protein science 4 (4), 561-602, 1995
PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees
H Mi, A Muruganujan, PD Thomas
Nucleic acids research 41 (D1), D377-D386, 2012
Expansion of the Gene Ontology knowledgebase and resources
Gene Ontology Consortium
Nucleic acids research 45 (D1), D331-D338, 2017
The InterPro protein families and domains database: 20 years on
M Blum, HY Chang, S Chuguransky, T Grego, S Kandasaamy, A Mitchell, ...
Nucleic acids research 49 (D1), D344-D354, 2021
InterPro in 2017—beyond protein family and domain annotations
RD Finn, TK Attwood, PC Babbitt, A Bateman, P Bork, AJ Bridge, ...
Nucleic acids research 45 (D1), D190-D199, 2017
InterPro in 2019: improving coverage, classification and access to protein sequence annotations
AL Mitchell, TK Attwood, PC Babbitt, M Blum, P Bork, A Bridge, SD Brown, ...
Nucleic acids research 47 (D1), D351-D360, 2019
The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database
ND Rawlings, AJ Barrett, PD Thomas, X Huang, A Bateman, RD Finn
Nucleic acids research 46 (D1), D624-D632, 2018
The InterPro protein families database: the classification resource after 15 years
A Mitchell, HY Chang, L Daugherty, M Fraser, S Hunter, R Lopez, ...
Nucleic acids research 43 (D1), D213-D221, 2015
Mapping genomic loci implicates genes and synaptic biology in schizophrenia
V Trubetskoy, AF Pardiņas, T Qi, G Panagiotaropoulou, S Awasthi, ...
Nature 604 (7906), 502-508, 2022
InterPro in 2011: new developments in the family and domain prediction database
S Hunter, P Jones, A Mitchell, R Apweiler, TK Attwood, A Bateman, ...
Nucleic acids research 40 (D1), D306-D312, 2012
Protocol Update for large-scale genome and gene function analysis with the PANTHER classification system (v. 14.0)
H Mi, A Muruganujan, X Huang, D Ebert, C Mills, X Guo, PD Thomas
Nature protocols 14 (3), 703-721, 2019
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