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Paul D Thomas
Paul D Thomas
Verified email at usc.edu - Homepage
Title
Cited by
Cited by
Year
The sequence of the human genome
JC Venter, MD Adams, EW Myers, PW Li, RJ Mural, GG Sutton, HO Smith, ...
science 291 (5507), 1304-1351, 2001
204612001
The gene ontology resource: 20 years and still GOing strong
Gene Ontology Consortium
Nucleic acids research 47 (D1), D330-D338, 2019
38332019
PANTHER: a library of protein families and subfamilies indexed by function
PD Thomas, MJ Campbell, A Kejariwal, H Mi, B Karlak, R Daverman, ...
Genome research 13 (9), 2129-2141, 2003
35122003
Gene ontology consortium: going forward
Gene Ontology Consortium
Nucleic acids research 43 (D1), D1049-D1056, 2015
30252015
PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools
H Mi, A Muruganujan, D Ebert, X Huang, PD Thomas
Nucleic acids research 47 (D1), D419-D426, 2019
29582019
The Gene Ontology resource: enriching a GOld mine
S Carbon, E Douglass, BM Good, DR Unni, NL Harris, CJ Mungall, ...
Nucleic Acids Research, 0
2831*
Large-scale gene function analysis with the PANTHER classification system
H Mi, A Muruganujan, JT Casagrande, PD Thomas
Nature protocols 8 (8), 1551-1566, 2013
27562013
PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements
H Mi, X Huang, A Muruganujan, H Tang, C Mills, D Kang, PD Thomas
Nucleic acids research 45 (D1), D183-D189, 2017
23212017
InterPro: the integrative protein signature database
S Hunter, R Apweiler, TK Attwood, A Bairoch, A Bateman, D Binns, P Bork, ...
Nucleic acids research 37 (suppl_1), D211-D215, 2009
22642009
Principles of protein folding—a perspective from simple exact models
KA Dill, S Bromberg, K Yue, HS Chan, KM Ftebig, DP Yee, PD Thomas
Protein science 4 (4), 561-602, 1995
20901995
PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees
H Mi, A Muruganujan, PD Thomas
Nucleic acids research 41 (D1), D377-D386, 2012
19642012
The InterPro protein families and domains database: 20 years on
M Blum, HY Chang, S Chuguransky, T Grego, S Kandasaamy, A Mitchell, ...
Nucleic acids research 49 (D1), D344-D354, 2021
18932021
Expansion of the Gene Ontology knowledgebase and resources
Gene Ontology Consortium
Nucleic acids research 45 (D1), D331-D338, 2017
1802*2017
Mapping genomic loci implicates genes and synaptic biology in schizophrenia
V Trubetskoy, AF Pardiņas, T Qi, G Panagiotaropoulou, S Awasthi, ...
Nature 604 (7906), 502-508, 2022
17222022
The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database
ND Rawlings, AJ Barrett, PD Thomas, X Huang, A Bateman, RD Finn
Nucleic acids research 46 (D1), D624-D632, 2018
16062018
InterPro in 2017—beyond protein family and domain annotations
RD Finn, TK Attwood, PC Babbitt, A Bateman, P Bork, AJ Bridge, ...
Nucleic acids research 45 (D1), D190-D199, 2017
15972017
InterPro in 2019: improving coverage, classification and access to protein sequence annotations
AL Mitchell, TK Attwood, PC Babbitt, M Blum, P Bork, A Bridge, SD Brown, ...
Nucleic acids research 47 (D1), D351-D360, 2019
15512019
InterPro in 2022
T Paysan-Lafosse, M Blum, S Chuguransky, T Grego, BL Pinto, ...
Nucleic Acids Research 51 (D1), D418-D427, 2023
14992023
The InterPro protein families database: the classification resource after 15 years
A Mitchell, HY Chang, L Daugherty, M Fraser, S Hunter, R Lopez, ...
Nucleic acids research 43 (D1), D213-D221, 2015
14282015
Protocol Update for large-scale genome and gene function analysis with the PANTHER classification system (v. 14.0)
H Mi, A Muruganujan, X Huang, D Ebert, C Mills, X Guo, PD Thomas
Nature protocols 14 (3), 703-721, 2019
13662019
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Articles 1–20