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Donghyuk Kim
Donghyuk Kim
Associate Professor, School of Energy and Chemical Engineering, UNIST
Verified email at unist.ac.kr - Homepage
Title
Cited by
Cited by
Year
Functional links between clustered microRNAs: suppression of cell-cycle inhibitors by microRNA clusters in gastric cancer
YK Kim, J Yu, TS Han, SY Park, B Namkoong, DH Kim, K Hur, MW Yoo, ...
Nucleic acids research 37 (5), 1672-1681, 2009
5712009
Network context and selection in the evolution to enzyme specificity
H Nam, NE Lewis, JA Lerman, DH Lee, RL Chang, D Kim, BO Palsson
Science 337 (6098), 1101-1104, 2012
3042012
Deciphering Fur transcriptional regulatory network highlights its complex role beyond iron metabolism in Escherichia coli
SW Seo, D Kim, H Latif, EJ O’Brien, R Szubin, BO Palsson
Nature Communications 5, 2014
2802014
Genome-wide reconstruction of OxyR and SoxRS transcriptional regulatory networks under oxidative stress in Escherichia coli K-12 MG1655
SW Seo, D Kim, R Szubin, BO Palsson
Cell reports 12 (8), 1289-1299, 2015
1802015
The Escherichia coli transcriptome mostly consists of independently regulated modules
AV Sastry, Y Gao, R Szubin, Y Hefner, S Xu, D Kim, KS Choudhary, ...
Nature communications 10 (1), 5536, 2019
1722019
Multi-omic data integration enables discovery of hidden biological regularities
A Ebrahim, E Brunk, J Tan, EJ O'brien, D Kim, R Szubin, JA Lerman, ...
Nature communications 7 (1), 13091, 2016
1602016
Comparative Analysis of Regulatory Elements between Escherichia coli and Klebsiella pneumoniae by Genome-Wide Transcription Start Site Profiling
D Kim, JSJ Hong, Y Qiu, H Nagarajan, JH Seo, BK Cho, SF Tsai, ...
Public Library of Science 8 (8), e1002867, 2012
1532012
Structural systems biology evaluation of metabolic thermotolerance in Escherichia coli
RL Chang, K Andrews, D Kim, Z Li, A Godzik, BO Palsson
Science 340 (6137), 1220-1223, 2013
1432013
Genome-scale reconstruction of the sigma factor network in Escherichia coli: topology and functional states
BK Cho, D Kim, EM Knight, K Zengler, BO Palsson
BMC biology 12 (1), 1, 2014
1282014
The PurR regulon in Escherichia coli K-12 MG1655
BK Cho, SA Federowicz, M Embree, YS Park, D Kim, BØ Palsson
Nucleic acids research 39 (15), 6456-6464, 2011
1262011
Global transcriptional regulatory network for Escherichia coli robustly connects gene expression to transcription factor activities
X Fang, A Sastry, N Mih, D Kim, J Tan, JT Yurkovich, CJ Lloyd, Y Gao, ...
Proceedings of the National Academy of Sciences 114 (38), 10286-10291, 2017
1032017
Systematic metabolic engineering of Methylomicrobium alcaliphilum 20Z for 2, 3-butanediol production from methane
AD Nguyen, IY Hwang, OK Lee, D Kim, MG Kalyuzhnaya, R Mariyana, ...
Metabolic engineering 47, 323-333, 2018
1022018
Functional cooperation of the glycine synthase-reductase and Wood–Ljungdahl pathways for autotrophic growth of Clostridium drakei
Y Song, JS Lee, J Shin, GM Lee, S Jin, S Kang, JK Lee, DR Kim, EY Lee, ...
Proceedings of the National Academy of Sciences 117 (13), 7516-7523, 2020
992020
Decoding genome-wide GadEWX-transcriptional regulatory networks reveals multifaceted cellular responses to acid stress in Escherichia coli
SW Seo, D Kim, EJ O’Brien, R Szubin, BO Palsson
Nature communications 6 (1), 7970, 2015
982015
Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655
Y Gao, JT Yurkovich, SW Seo, I Kabimoldayev, A Dräger, K Chen, ...
Nucleic Acids Research 46 (20), 10682-10696, 2018
932018
Cellular responses to reactive oxygen species are predicted from molecular mechanisms
L Yang, N Mih, A Anand, JH Park, J Tan, JT Yurkovich, JM Monk, CJ Lloyd, ...
Proceedings of the National Academy of Sciences 116 (28), 14368-14373, 2019
892019
Determining the control circuitry of redox metabolism at the genome-scale
S Federowicz, D Kim, A Ebrahim, J Lerman, H Nagarajan, B Cho, ...
PLoS genetics 10 (4), e1004264, 2014
792014
Systems assessment of transcriptional regulation on central carbon metabolism by Cra and CRP
D Kim, SW Seo, Y Gao, H Nam, GI Guzman, BK Cho, BO Palsson
Nucleic acids research 46 (6), 2901-2917, 2018
722018
Prevalence of extended-spectrum β-lactamases in the local farm environment and livestock: challenges to mitigate antimicrobial resistance
S Lee, RA Mir, SH Park, D Kim, HY Kim, RK Boughton, JG Morris Jr, ...
Critical reviews in microbiology 46 (1), 1-14, 2020
622020
Genome-scale evaluation of core one-carbon metabolism in gammaproteobacterial methanotrophs grown on methane and methanol
AD Nguyen, JY Park, IY Hwang, R Hamilton, MG Kalyuzhnaya, D Kim, ...
Metabolic engineering 57, 1-12, 2020
502020
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