Frederic Bushman
Frederic Bushman
Unknown affiliation
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Cited by
Cited by
QIIME allows analysis of high-throughput community sequencing data
JG Caporaso, J Kuczynski, J Stombaugh, K Bittinger, FD Bushman, ...
Nature methods 7 (5), 335-336, 2010
Linking long-term dietary patterns with gut microbial enterotypes
GD Wu, J Chen, C Hoffmann, K Bittinger, YY Chen, SA Keilbaugh, ...
Science 334 (6052), 105-108, 2011
Intestinal microbiota metabolism of L-carnitine, a nutrient in red meat, promotes atherosclerosis
RA Koeth, Z Wang, BS Levison, JA Buffa, E Org, BT Sheehy, EB Britt, X Fu, ...
Nature medicine 19 (5), 576-585, 2013
PyNAST: a flexible tool for aligning sequences to a template alignment
JG Caporaso, K Bittinger, FD Bushman, TZ DeSantis, GL Andersen, ...
Bioinformatics 26 (2), 266-267, 2010
HIV-1 integration in the human genome favors active genes and local hotspots
ARW Schröder, P Shinn, H Chen, C Berry, JR Ecker, F Bushman
Cell 110 (4), 521-529, 2002
Insertional oncogenesis in 4 patients after retrovirus-mediated gene therapy of SCID-X1
S Hacein-Bey-Abina, A Garrigue, GP Wang, J Soulier, A Lim, E Morillon, ...
The Journal of clinical investigation 118 (9), 3132-3142, 2008
High-fat diet determines the composition of the murine gut microbiome independently of obesity
MA Hildebrandt, C Hoffmann, SA Sherrill–Mix, SA Keilbaugh, M Hamady, ...
Gastroenterology 137 (5), 1716-1724. e2, 2009
Transfusion independence and HMGA2 activation after gene therapy of human β-thalassaemia
M Cavazzana-Calvo, E Payen, O Negre, G Wang, K Hehir, F Fusil, ...
Nature 467 (7313), 318-322, 2010
Bayesian community-wide culture-independent microbial source tracking
D Knights, J Kuczynski, ES Charlson, J Zaneveld, MC Mozer, RG Collman, ...
Nature methods 8 (9), 761-763, 2011
Retroviral DNA integration: ASLV, HIV, and MLV show distinct target site preferences
RS Mitchell, BF Beitzel, ARW Schroder, P Shinn, H Chen, CC Berry, ...
PLoS biology 2 (8), e234, 2004
Topographical continuity of bacterial populations in the healthy human respiratory tract
ES Charlson, K Bittinger, AR Haas, AS Fitzgerald, I Frank, A Yadav, ...
American journal of respiratory and critical care medicine 184 (8), 957-963, 2011
CRISPR-engineered T cells in patients with refractory cancer
EA Stadtmauer, JA Fraietta, MM Davis, AD Cohen, KL Weber, E Lancaster, ...
Science 367 (6481), eaba7365, 2020
Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication
R König, Y Zhou, D Elleder, TL Diamond, GMC Bonamy, JT Irelan, ...
Cell 135 (1), 49-60, 2008
The human gut virome: inter-individual variation and dynamic response to diet
S Minot, R Sinha, J Chen, H Li, SA Keilbaugh, GD Wu, JD Lewis, ...
Genome research 21 (10), 1616-1625, 2011
Association between breast milk bacterial communities and establishment and development of the infant gut microbiome
PS Pannaraj, F Li, C Cerini, JM Bender, S Yang, A Rollie, H Adisetiyo, ...
JAMA pediatrics 171 (7), 647-654, 2017
Human immunodeficiency virus type 1 preintegration complexes: studies of organization and composition
MD Miller, CM Farnet, FD Bushman
Journal of virology 71 (7), 5382-5390, 1997
Associating microbiome composition with environmental covariates using generalized UniFrac distances
J Chen, K Bittinger, ES Charlson, C Hoffmann, J Lewis, GD Wu, ...
Bioinformatics 28 (16), 2106-2113, 2012
Enterotypes in the landscape of gut microbial community composition
PI Costea, F Hildebrand, M Arumugam, F Bäckhed, MJ Blaser, ...
Nature microbiology 3 (1), 8-16, 2018
Archaea and fungi of the human gut microbiome: correlations with diet and bacterial residents
C Hoffmann, S Dollive, S Grunberg, J Chen, H Li, GD Wu, JD Lewis, ...
PloS one 8 (6), e66019, 2013
A quantitative assay for HIV DNA integration in vivo
SL Butler, MST Hansen, FD Bushman
Nature medicine 7 (5), 631-634, 2001
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