Follow
Dhirendra Kumar
Dhirendra Kumar
NIEHS
Verified email at nih.gov - Homepage
Title
Cited by
Cited by
Year
Proteogenomic analysis of Mycobacterium tuberculosis by high resolution mass spectrometry
DS Kelkar, D Kumar, P Kumar, L Balakrishnan, B Muthusamy, AK Yadav, ...
Molecular & cellular proteomics 10 (12), 2011
1912011
Integrating transcriptome and proteome profiling: Strategies and applications
D Kumar, G Bansal, A Narang, T Basak, T Abbas, D Dash
Proteomics 16 (19), 2533-2544, 2016
1682016
Multi-omic profiling reveals dynamics of the phased progression of pluripotency
P Yang, SJ Humphrey, S Cinghu, R Pathania, AJ Oldfield, D Kumar, ...
Cell Systems 8 (5), 427-445. e10, 2019
1222019
Transcriptome and venom proteome of the box jellyfish Chironex fleckeri
DL Brinkman, X Jia, J Potriquet, D Kumar, D Dash, D Kvaskoff, ...
BMC genomics 16, 1-15, 2015
1072015
A systematic analysis of eluted fraction of plasma post immunoaffinity depletion: implications in biomarker discovery
AK Yadav, G Bhardwaj, T Basak, D Kumar, S Ahmad, R Priyadarshini, ...
PloS one 6 (9), e24442, 2011
1062011
Intragenic Enhancers Attenuate Host Gene Expression
S Cinghu, P Yang, JP Kosak, AE Conway, D Kumar, AJ Oldfield, ...
Molecular cell 68 (1), 2017
882017
MassWiz: a novel scoring algorithm with target-decoy based analysis pipeline for tandem mass spectrometry
AK Yadav, D Kumar, D Dash
Journal of proteome research 10 (5), 2154-2160, 2011
592011
Decoding the function of bivalent chromatin in development and cancer
D Kumar, S Cinghu, AJ Oldfield, P Yang, R Jothi
Genome Research, 2021
582021
Expression profiling of lymph nodes in tuberculosis patients reveal inflammatory milieu at site of infection
A Maji, R Misra, A Kumar Mondal, D Kumar, D Bajaj, A Singhal, G Arora, ...
Scientific reports 5 (1), 15214, 2015
572015
GLIS3 is indispensable for TSH/TSHR-dependent thyroid hormone biosynthesis and follicular cell proliferation
HS Kang, D Kumar, G Liao, K Lichti-Kaiser, K Gerrish, XH Liao, S Refetoff, ...
Journal of Clinical Investigation, 2017
56*2017
NF-Y controls fidelity of transcription initiation at gene promoters through maintenance of the nucleosome-depleted region
AJ Oldfield, T Henriques, D Kumar, AB Burkholder, D Paulet, S Cinghu, ...
Nature Communications, 2019
542019
Polyketide quinones are alternate intermediate electron carriers during mycobacterial respiration in oxygen-deficient niches
A Anand, P Verma, AK Singh, S Kaushik, R Pandey, C Shi, H Kaur, ...
Molecular cell 60 (4), 637-650, 2015
482015
Proteogenomic analysis of Bradyrhizobium japonicum USDA110 using GenoSuite, an automated multi-algorithmic pipeline
D Kumar, AK Yadav, PK Kadimi, SH Nagaraj, SM Grimmond, D Dash
Molecular & cellular proteomics 12 (11), 3388-3397, 2013
472013
Integrated transcriptomic-proteomic analysis using a proteogenomic workflow refines rat genome annotation
D Kumar, AK Yadav, X Jia, J Mulvenna, D Dash
Molecular & Cellular Proteomics 15 (1), 329-339, 2016
392016
Choosing an Optimal Database for Protein Identification from Tandem Mass Spectrometry Data
D Kumar, AK Yadav, D Dash
Methods in Molecular Biology, Proteome Bioinformatics 1549, 2016
382016
Integration host factor of Mycobacterium tuberculosis, mIHF, compacts DNA by a bending mechanism
A Mishra, M Vij, D Kumar, V Taneja, AK Mondal, A Bothra, V Rao, ...
PloS one 8 (7), e69985, 2013
292013
Learning from decoys to improve the sensitivity and specificity of proteomics database search results
AK Yadav, D Kumar, D Dash
PloS one 7 (11), e50651, 2012
262012
GLIS3 Transcriptionally Activates WNT Genes to Promote Differentiation of Human Embryonic Stem Cells into Posterior Neural Progenitors.
K Jeon, D Kumar, AE Conway, K Park, R Jothi, AM Jetten
Stem Cells, 2018
222018
Spectrum of large copy number variations in 26 diverse Indian populations: potential involvement in phenotypic diversity
P Gautam, P Jha, D Kumar, S Tyagi, B Varma, D Dash, A Mukhopadhyay, ...
Human genetics 131, 131-143, 2012
222012
Discovery of rare protein‐coding genes in model methylotroph Methylobacterium extorquens AM1
D Kumar, AK Mondal, AK Yadav, D Dash
Proteomics 14 (23-24), 2790-2794, 2014
192014
The system can't perform the operation now. Try again later.
Articles 1–20