Jorge Duitama
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Genomic and bioinformatic profiling of mutational neoepitopes reveals new rules to predict anticancer immunogenicity
F Duan, J Duitama, S Al Seesi, CM Ayres, SA Corcelli, AP Pawashe, ...
The Journal of experimental medicine 211 (11), 2231-2248, 2014
Fosmid-based whole genome haplotyping of a HapMap trio child: evaluation of Single Individual Haplotyping techniques
J Duitama, GK McEwen, T Huebsch, S Palczewski, S Schulz, ...
Nucleic acids research 40 (5), 2041-2053, 2012
An integrated framework for discovery and genotyping of genomic variants from high-throughput sequencing experiments
J Duitama, JC Quintero, DF Cruz, C Quintero, G Hubmann, ...
Nucleic acids research 42 (6), e44-e44, 2014
A comprehensively molecular haplotype-resolved genome of a European individual
EK Suk, GK McEwen, J Duitama, K Nowick, S Schulz, S Palczewski, ...
Genome research 21 (10), 1672-1685, 2011
Structural variants in 3000 rice genomes
RR Fuentes, D Chebotarov, J Duitama, S Smith, JF De la Hoz, ...
Genome research 29 (5), 870-880, 2019
Comparative polygenic analysis of maximal ethanol accumulation capacity and tolerance to high ethanol levels of cell proliferation in yeast
TM Pais, MR Foulquié-Moreno, G Hubmann, J Duitama, S Swinnen, ...
PLoS genetics 9 (6), e1003548, 2013
Large-scale analysis of tandem repeat variability in the human genome
J Duitama, A Zablotskaya, R Gemayel, A Jansen, S Belet, JR Vermeesch, ...
Nucleic acids research 42 (9), 5728-5741, 2014
ReFHap: a reliable and fast algorithm for single individual haplotyping
J Duitama, T Huebsch, G McEwen, EK Suk, MR Hoehe
Proceedings of the First ACM International Conference on Bioinformatics and …, 2010
Whole Genome Sequencing of Elite Rice Cultivars as a Comprehensive Information Resource for Marker Assisted Selection
J Duitama, A Silva, Y Sanabria, DF Cruz, C Quintero, C Ballen, M Lorieux, ...
PLoS One 10 (4), e0124617, 2015
Phenotypic and genetic dissection of component traits for early vigour in rice using plant growth modelling, sugar content analyses and association mapping
MC Rebolledo, M Dingkuhn, B Courtois, Y Gibon, A Clément-Vidal, ...
Journal of experimental botany 66 (18), 5555-5566, 2015
Resequencing of common bean identifies regions of inter–gene pool introgression and provides comprehensive resources for molecular breeding
JD Lobaton, T Miller, J Gil, D Ariza, JF de la Hoz, A Soler, S Beebe, ...
The plant genome 11 (2), 170068, 2018
Bioinformatic analysis of genotype by sequencing (GBS) data with NGSEP
C Perea, JF De La Hoz, DF Cruz, JD Lobaton, P Izquierdo, JC Quintero, ...
BMC Genomics 17 (5), 498, 2016
Towards accurate detection and genotyping of expressed variants from whole transcriptome sequencing data
J Duitama, PK Srivastava, II Măndoiu
BMC genomics 13 (Suppl 2), S6, 2012
Identification of cassava MicroRNAs under abiotic stress
C Ballén-Taborda, G Plata, S Ayling, F Rodríguez-Zapata, ...
International journal of genomics 2013, 2013
Combining image analysis, genome wide association studies and different field trials to reveal stable genetic regions related to panicle architecture and the number of …
MC Rebolledo, AL Peña, J Duitama, DF Cruz, M Dingkuhn, C Grenier, ...
Frontiers in plant science 7, 1384, 2016
Identification of multiple interacting alleles conferring low glycerol and high ethanol yield in Saccharomyces cerevisiae ethanolic fermentation
G Hubmann, L Mathé, MR Foulquié-Moreno, J Duitama, E Nevoigt, ...
Biotechnol Biofuels 6, 87, 2013
Improved linkage analysis of Quantitative Trait Loci using bulk segregants unveils a novel determinant of high ethanol tolerance in yeast
J Duitama, A Sánchez-Rodríguez, A Goovaerts, S Pulido-Tamayo, ...
BMC genomics 15 (1), 207, 2014
Quantitative trait analysis of yeast biodiversity yields novel gene tools for metabolic engineering
G Hubmann, MR Foulquié-Moreno, E Nevoigt, J Duitama, N Meurens, ...
Metabolic engineering 17, 68-81, 2013
NGSEP3: accurate variant calling across species and sequencing protocols
D Tello, J Gil, CD Loaiza, JJ Riascos, N Cardozo, J Duitama
Bioinformatics 35 (22), 4716-4723, 2019
PrimerHunter: a primer design tool for PCR-based virus subtype identification
J Duitama, DM Kumar, E Hemphill, M Khan, II Măndoiu, CE Nelson
Nucleic acids research 37 (8), 2483-2492, 2009
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