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Jorge Duitama
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Genomic and bioinformatic profiling of mutational neoepitopes reveals new rules to predict anticancer immunogenicity
F Duan, J Duitama, S Al Seesi, CM Ayres, SA Corcelli, AP Pawashe, ...
The Journal of experimental medicine 211 (11), 2231-2248, 2014
4212014
Fosmid-based whole genome haplotyping of a HapMap trio child: evaluation of Single Individual Haplotyping techniques
J Duitama, GK McEwen, T Huebsch, S Palczewski, S Schulz, ...
Nucleic acids research 40 (5), 2041-2053, 2012
1512012
An integrated framework for discovery and genotyping of genomic variants from high-throughput sequencing experiments
J Duitama, JC Quintero, DF Cruz, C Quintero, G Hubmann, ...
Nucleic acids research 42 (6), e44-e44, 2014
1282014
Structural variants in 3000 rice genomes
RR Fuentes, D Chebotarov, J Duitama, S Smith, JF De la Hoz, ...
Genome research 29 (5), 870-880, 2019
1252019
A comprehensively molecular haplotype-resolved genome of a European individual
EK Suk, GK McEwen, J Duitama, K Nowick, S Schulz, S Palczewski, ...
Genome research 21 (10), 1672-1685, 2011
1112011
Comparative polygenic analysis of maximal ethanol accumulation capacity and tolerance to high ethanol levels of cell proliferation in yeast
TM Pais, MR Foulquié-Moreno, G Hubmann, J Duitama, S Swinnen, ...
PLoS genetics 9 (6), e1003548, 2013
1032013
ReFHap: a reliable and fast algorithm for single individual haplotyping
J Duitama, T Huebsch, G McEwen, EK Suk, MR Hoehe
Proceedings of the First ACM International Conference on Bioinformatics and …, 2010
822010
Whole Genome Sequencing of Elite Rice Cultivars as a Comprehensive Information Resource for Marker Assisted Selection
J Duitama, A Silva, Y Sanabria, DF Cruz, C Quintero, C Ballen, M Lorieux, ...
PLoS One 10 (4), e0124617, 2015
812015
Large-scale analysis of tandem repeat variability in the human genome
J Duitama, A Zablotskaya, R Gemayel, A Jansen, S Belet, JR Vermeesch, ...
Nucleic acids research 42 (9), 5728-5741, 2014
802014
Resequencing of common bean identifies regions of inter–gene pool introgression and provides comprehensive resources for molecular breeding
JD Lobaton, T Miller, J Gil, D Ariza, JF de la Hoz, A Soler, S Beebe, ...
The plant genome 11 (2), 170068, 2018
752018
Phenotypic and genetic dissection of component traits for early vigour in rice using plant growth modelling, sugar content analyses and association mapping
MC Rebolledo, M Dingkuhn, B Courtois, Y Gibon, A Clément-Vidal, ...
Journal of experimental botany 66 (18), 5555-5566, 2015
712015
Bioinformatic analysis of genotype by sequencing (GBS) data with NGSEP
C Perea, JF De La Hoz, DF Cruz, JD Lobaton, P Izquierdo, JC Quintero, ...
BMC Genomics 17 (5), 498, 2016
692016
Combining image analysis, genome wide association studies and different field trials to reveal stable genetic regions related to panicle architecture and the number of …
MC Rebolledo, AL Peña, J Duitama, DF Cruz, M Dingkuhn, C Grenier, ...
Frontiers in plant science 7, 1384, 2016
632016
Towards accurate detection and genotyping of expressed variants from whole transcriptome sequencing data
J Duitama, PK Srivastava, II Măndoiu
BMC genomics 13 (Suppl 2), S6, 2012
602012
NGSEP3: accurate variant calling across species and sequencing protocols
D Tello, J Gil, CD Loaiza, JJ Riascos, N Cardozo, J Duitama
Bioinformatics 35 (22), 4716-4723, 2019
592019
Identification of cassava MicroRNAs under abiotic stress
C Ballén-Taborda, G Plata, S Ayling, F Rodríguez-Zapata, ...
International journal of genomics 2013, 2013
592013
Identification of multiple interacting alleles conferring low glycerol and high ethanol yield in Saccharomyces cerevisiae ethanolic fermentation
G Hubmann, L Mathé, MR Foulquié-Moreno, J Duitama, E Nevoigt, ...
Biotechnol Biofuels 6, 87, 2013
552013
Improved linkage analysis of Quantitative Trait Loci using bulk segregants unveils a novel determinant of high ethanol tolerance in yeast
J Duitama, A Sánchez-Rodríguez, A Goovaerts, S Pulido-Tamayo, ...
BMC genomics 15 (1), 207, 2014
512014
Quantitative trait analysis of yeast biodiversity yields novel gene tools for metabolic engineering
G Hubmann, MR Foulquié-Moreno, E Nevoigt, J Duitama, N Meurens, ...
Metabolic engineering 17, 68-81, 2013
512013
PrimerHunter: a primer design tool for PCR-based virus subtype identification
J Duitama, DM Kumar, E Hemphill, M Khan, II Măndoiu, CE Nelson
Nucleic acids research 37 (8), 2483-2492, 2009
492009
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Articles 1–20