| Genomic and bioinformatic profiling of mutational neoepitopes reveals new rules to predict anticancer immunogenicity F Duan, J Duitama, S Al Seesi, CM Ayres, SA Corcelli, AP Pawashe, ... The Journal of experimental medicine 211 (11), 2231-2248, 2014 | 368 | 2014 |
| Fosmid-based whole genome haplotyping of a HapMap trio child: evaluation of Single Individual Haplotyping techniques J Duitama, GK McEwen, T Huebsch, S Palczewski, S Schulz, ... Nucleic acids research 40 (5), 2041-2053, 2012 | 145 | 2012 |
| An integrated framework for discovery and genotyping of genomic variants from high-throughput sequencing experiments J Duitama, JC Quintero, DF Cruz, C Quintero, G Hubmann, ... Nucleic acids research 42 (6), e44-e44, 2014 | 120 | 2014 |
| A comprehensively molecular haplotype-resolved genome of a European individual EK Suk, GK McEwen, J Duitama, K Nowick, S Schulz, S Palczewski, ... Genome research 21 (10), 1672-1685, 2011 | 109 | 2011 |
| Structural variants in 3000 rice genomes RR Fuentes, D Chebotarov, J Duitama, S Smith, JF De la Hoz, ... Genome research 29 (5), 870-880, 2019 | 106 | 2019 |
| Comparative polygenic analysis of maximal ethanol accumulation capacity and tolerance to high ethanol levels of cell proliferation in yeast TM Pais, MR Foulquié-Moreno, G Hubmann, J Duitama, S Swinnen, ... PLoS genetics 9 (6), e1003548, 2013 | 101 | 2013 |
| Large-scale analysis of tandem repeat variability in the human genome J Duitama, A Zablotskaya, R Gemayel, A Jansen, S Belet, JR Vermeesch, ... Nucleic acids research 42 (9), 5728-5741, 2014 | 79 | 2014 |
| ReFHap: a reliable and fast algorithm for single individual haplotyping J Duitama, T Huebsch, G McEwen, EK Suk, MR Hoehe Proceedings of the First ACM International Conference on Bioinformatics and …, 2010 | 79 | 2010 |
| Whole Genome Sequencing of Elite Rice Cultivars as a Comprehensive Information Resource for Marker Assisted Selection J Duitama, A Silva, Y Sanabria, DF Cruz, C Quintero, C Ballen, M Lorieux, ... PLoS One 10 (4), e0124617, 2015 | 77 | 2015 |
| Phenotypic and genetic dissection of component traits for early vigour in rice using plant growth modelling, sugar content analyses and association mapping MC Rebolledo, M Dingkuhn, B Courtois, Y Gibon, A Clément-Vidal, ... Journal of experimental botany 66 (18), 5555-5566, 2015 | 68 | 2015 |
| Resequencing of common bean identifies regions of inter–gene pool introgression and provides comprehensive resources for molecular breeding JD Lobaton, T Miller, J Gil, D Ariza, JF de la Hoz, A Soler, S Beebe, ... The plant genome 11 (2), 170068, 2018 | 67 | 2018 |
| Bioinformatic analysis of genotype by sequencing (GBS) data with NGSEP C Perea, JF De La Hoz, DF Cruz, JD Lobaton, P Izquierdo, JC Quintero, ... BMC Genomics 17 (5), 498, 2016 | 63 | 2016 |
| Towards accurate detection and genotyping of expressed variants from whole transcriptome sequencing data J Duitama, PK Srivastava, II Măndoiu BMC genomics 13 (Suppl 2), S6, 2012 | 59 | 2012 |
| Identification of cassava MicroRNAs under abiotic stress C Ballén-Taborda, G Plata, S Ayling, F Rodríguez-Zapata, ... International journal of genomics 2013, 2013 | 58 | 2013 |
| Combining image analysis, genome wide association studies and different field trials to reveal stable genetic regions related to panicle architecture and the number of … MC Rebolledo, AL Peña, J Duitama, DF Cruz, M Dingkuhn, C Grenier, ... Frontiers in plant science 7, 1384, 2016 | 56 | 2016 |
| Identification of multiple interacting alleles conferring low glycerol and high ethanol yield in Saccharomyces cerevisiae ethanolic fermentation G Hubmann, L Mathé, MR Foulquié-Moreno, J Duitama, E Nevoigt, ... Biotechnol Biofuels 6, 87, 2013 | 52 | 2013 |
| Improved linkage analysis of Quantitative Trait Loci using bulk segregants unveils a novel determinant of high ethanol tolerance in yeast J Duitama, A Sánchez-Rodríguez, A Goovaerts, S Pulido-Tamayo, ... BMC genomics 15 (1), 207, 2014 | 49 | 2014 |
| Quantitative trait analysis of yeast biodiversity yields novel gene tools for metabolic engineering G Hubmann, MR Foulquié-Moreno, E Nevoigt, J Duitama, N Meurens, ... Metabolic engineering 17, 68-81, 2013 | 49 | 2013 |
| NGSEP3: accurate variant calling across species and sequencing protocols D Tello, J Gil, CD Loaiza, JJ Riascos, N Cardozo, J Duitama Bioinformatics 35 (22), 4716-4723, 2019 | 48 | 2019 |
| PrimerHunter: a primer design tool for PCR-based virus subtype identification J Duitama, DM Kumar, E Hemphill, M Khan, II Măndoiu, CE Nelson Nucleic acids research 37 (8), 2483-2492, 2009 | 44 | 2009 |
K.J. VerstrepenProfessor, KU Leuven and Group Leader, VIBVerified email at biw.vib-kuleuven.be
