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Paul E. Abraham
Paul E. Abraham
Verified email at ornl.gov
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Year
A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world
X Yang, JC Cushman, AM Borland, EJ Edwards, SD Wullschleger, ...
New Phytologist 207 (3), 491-504, 2015
1942015
Environmental proteomics of microbial plankton in a highly productive coastal upwelling system
SM Sowell, PE Abraham, M Shah, NC Verberkmoes, DP Smith, ...
The ISME journal 5 (5), 856-865, 2011
1742011
Proteogenomic Monitoring of Geobacter Physiology during Stimulated Uranium Bioremediation
MJ Wilkins, NC VerBerkmoes, KH Williams, SJ Callister, PJ Mouser, ...
Applied and environmental microbiology 75 (20), 6591-6599, 2009
1432009
Discovery and annotation of small proteins using genomics, proteomics, and computational approaches
X Yang, TJ Tschaplinski, GB Hurst, S Jawdy, PE Abraham, PK Lankford, ...
Genome research 21 (4), 634-641, 2011
1182011
Transcript, protein and metabolite temporal dynamics in the CAM plant Agave
PE Abraham, H Yin, AM Borland, D Weighill, SD Lim, HC De Paoli, ...
Nature Plants 2 (12), 1-10, 2016
1142016
The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism
X Yang, R Hu, H Yin, J Jenkins, S Shu, H Tang, D Liu, DA Weighill, ...
Nature communications 8 (1), 1-15, 2017
1022017
Microbial metaproteomics for characterizing the range of metabolic functions and activities of human gut microbiota
W Xiong, PE Abraham, Z Li, C Pan, RL Hettich
Proteomics 15 (20), 3424-3438, 2015
1022015
Eliminating a global regulator of carbon catabolite repression enhances the conversion of aromatic lignin monomers to muconate in Pseudomonas putida KT2440
CW Johnson, PE Abraham, JG Linger, P Khanna, RL Hettich, ...
Metabolic engineering communications 5, 19-25, 2017
892017
Proteomics‐inferred genome typing (PIGT) demonstrates inter‐population recombination as a strategy for environmental adaptation
VJ Denef, NC VerBerkmoes, MB Shah, P Abraham, M Lefsrud, RL Hettich, ...
Environmental microbiology 11 (2), 313-325, 2009
682009
Outer membrane vesicles catabolize lignin-derived aromatic compounds in Pseudomonas putida KT2440
D Salvachúa, AZ Werner, I Pardo, M Michalska, BA Black, BS Donohoe, ...
Proceedings of the National Academy of Sciences 117 (17), 9302-9310, 2020
622020
Defining the Boundaries and Characterizing the Landscape of Functional Genome Expression in Vascular Tissues of Populus using Shotgun Proteomics
P Abraham, R Adams, RJ Giannone, U Kalluri, P Ranjan, B Erickson, ...
Journal of proteome research 11 (1), 449-460, 2012
492012
Phosphorylation of ribosomal protein RPS6 integrates light signals and circadian clock signals
R Enganti, SK Cho, JD Toperzer, RA Urquidi-Camacho, OS Cakir, AP Ray, ...
Frontiers in plant science 8, 2210, 2018
392018
Transcriptomic and proteomic insights into innate immunity and adaptations to a symbiotic lifestyle in the gutless marine worm Olavius algarvensis
J Wippler, M Kleiner, C Lott, A Gruhl, PE Abraham, RJ Giannone, ...
BMC genomics 17 (1), 1-19, 2016
372016
Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave
H Yin, HB Guo, DJ Weston, AM Borland, P Ranjan, PE Abraham, ...
BMC genomics 19 (1), 1-16, 2018
342018
The nature of the progression of drought stress drives differential metabolomic responses in Populus deltoides
TJ Tschaplinski, PE Abraham, SS Jawdy, LE Gunter, MZ Martin, NL Engle, ...
Annals of Botany 124 (4), 617-626, 2019
312019
Putting the pieces together: high-performance LC-MS/MS provides network-, pathway-, and protein-level perspectives in Populus
P Abraham, RJ Giannone, RM Adams, U Kalluri, GA Tuskan, RL Hettich
Molecular & Cellular Proteomics 12 (1), 106-119, 2013
292013
Global proteome response to deletion of genes related to mercury methylation and dissimilatory metal reduction reveals changes in respiratory metabolism in Geobacter …
C Qian, A Johs, H Chen, BF Mann, X Lu, PE Abraham, RL Hettich, B Gu
Journal of proteome research 15 (10), 3540-3549, 2016
262016
Metabolism of syringyl lignin-derived compounds in Pseudomonas putida enables convergent production of 2-pyrone-4, 6-dicarboxylic acid
S Notonier, AZ Werner, E Kuatsjah, L Dumalo, PE Abraham, EA Hatmaker, ...
Metabolic Engineering 65, 111-122, 2021
202021
Metaproteomics: extracting and mining proteome information to characterize metabolic activities in microbial communities
PE Abraham, RJ Giannone, W Xiong, RL Hettich
Current protocols in bioinformatics 46 (1), 13.26. 1-13.26. 14, 2014
202014
Phytobiome and Transcriptional Adaptation of Populus deltoides to Acute Progressive Drought and Cyclic Drought
BJ Garcia, JL Labbé, P Jones, PE Abraham, I Hodge, S Climer, S Jawdy, ...
Phytobiomes Journal 2 (4), 249-260, 2018
192018
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