| High-resolution comparative modeling with RosettaCM Y Song, F DiMaio, RYR Wang, D Kim, C Miles, TJ Brunette, J Thompson, ... Structure 21 (10), 1735-1742, 2013 | 800 | 2013 |
| The Rosetta all-atom energy function for macromolecular modeling and design RF Alford, A Leaver-Fay, JR Jeliazkov, MJ O’Meara, FP DiMaio, H Park, ... Journal of chemical theory and computation 13 (6), 3031-3048, 2017 | 695 | 2017 |
| Accurate prediction of protein structures and interactions using a three-track neural network M Baek, F DiMaio, I Anishchenko, J Dauparas, S Ovchinnikov, GR Lee, ... Science 373 (6557), 871-876, 2021 | 658 | 2021 |
| Crystal structure of a monomeric retroviral protease solved by protein folding game players F Khatib, F DiMaio, S Cooper, M Kazmierczyk, M Gilski, S Krzywda, ... Nature structural & molecular biology 18 (10), 1175-1177, 2011 | 613 | 2011 |
| EMRinger: side chain–directed model and map validation for 3D cryo-electron microscopy BA Barad, N Echols, RYR Wang, Y Cheng, F DiMaio, PD Adams, ... Nature methods 12 (10), 943-946, 2015 | 545 | 2015 |
| Structure prediction for CASP8 with all‐atom refinement using Rosetta S Raman, R Vernon, J Thompson, M Tyka, R Sadreyev, J Pei, D Kim, ... Proteins: Structure, Function, and Bioinformatics 77 (S9), 89-99, 2009 | 500 | 2009 |
| Cryo-electron microscopy structure of a coronavirus spike glycoprotein trimer AC Walls, MA Tortorici, BJ Bosch, B Frenz, PJM Rottier, F DiMaio, FA Rey, ... Nature 531 (7592), 114-117, 2016 | 437 | 2016 |
| Glycan shield and epitope masking of a coronavirus spike protein observed by cryo-electron microscopy AC Walls, MA Tortorici, B Frenz, J Snijder, W Li, FA Rey, F DiMaio, ... Nature structural & molecular biology 23 (10), 899-905, 2016 | 300 | 2016 |
| Atomic-accuracy models from 4.5-Ĺ cryo-electron microscopy data with density-guided iterative local refinement F DiMaio, Y Song, X Li, MJ Brunner, C Xu, V Conticello, E Egelman, ... Nature methods 12 (4), 361-365, 2015 | 298 | 2015 |
| Refinement of protein structures into low-resolution density maps using rosetta F DiMaio, MD Tyka, ML Baker, W Chiu, D Baker Journal of molecular biology 392 (1), 181-190, 2009 | 278 | 2009 |
| Alternate states of proteins revealed by detailed energy landscape mapping MD Tyka, DA Keedy, I André, F DiMaio, Y Song, DC Richardson, ... Journal of molecular biology 405 (2), 607-618, 2011 | 261 | 2011 |
| De novo design of protein homo-oligomers with modular hydrogen-bond network–mediated specificity SE Boyken, Z Chen, B Groves, RA Langan, G Oberdorfer, A Ford, ... Science 352 (6286), 680-687, 2016 | 254 | 2016 |
| High thermodynamic stability of parametrically designed helical bundles PS Huang, G Oberdorfer, C Xu, XY Pei, BL Nannenga, JM Rogers, ... science 346 (6208), 481-485, 2014 | 253 | 2014 |
| Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta RYR Wang, Y Song, BA Barad, Y Cheng, JS Fraser, F DiMaio Elife 5, e17219, 2016 | 251 | 2016 |
| Improved molecular replacement by density-and energy-guided protein structure optimization F DiMaio, TC Terwilliger, RJ Read, A Wlodawer, G Oberdorfer, U Wagner, ... Nature 473 (7348), 540-543, 2011 | 244 | 2011 |
| Relaxation of backbone bond geometry improves protein energy landscape modeling P Conway, MD Tyka, F DiMaio, DE Konerding, D Baker Protein Science 23 (1), 47-55, 2014 | 239 | 2014 |
| Simultaneous optimization of biomolecular energy functions on features from small molecules and macromolecules H Park, P Bradley, P Greisen Jr, Y Liu, VK Mulligan, DE Kim, D Baker, ... Journal of chemical theory and computation 12 (12), 6201-6212, 2016 | 238 | 2016 |
| Near-atomic model of microtubule-tau interactions EH Kellogg, NMA Hejab, S Poepsel, KH Downing, F DiMaio, E Nogales Science 360 (6394), 1242-1246, 2018 | 226 | 2018 |
| Design of ordered two-dimensional arrays mediated by noncovalent protein-protein interfaces S Gonen, F DiMaio, T Gonen, D Baker Science 348 (6241), 1365-1368, 2015 | 219 | 2015 |
| Structure of the type VI secretion system contractile sheath M Kudryashev, RYR Wang, M Brackmann, S Scherer, T Maier, D Baker, ... Cell 160 (5), 952-962, 2015 | 205 | 2015 |
