| US immigration westernizes the human gut microbiome P Vangay, AJ Johnson, TL Ward, GA Al-Ghalith, RR Shields-Cutler, ... Cell 175 (4), 962-972. e10, 2018 | 656 | 2018 |
| Daily sampling reveals personalized diet-microbiome associations in humans AJ Johnson, P Vangay, GA Al-Ghalith, BM Hillmann, TL Ward, ... Cell host & microbe 25 (6), 789-802. e5, 2019 | 526 | 2019 |
| Evaluating the information content of shallow shotgun metagenomics B Hillmann, GA Al-Ghalith, RR Shields-Cutler, Q Zhu, DM Gohl, ... Msystems 3 (6), 10.1128/msystems. 00069-18, 2018 | 311 | 2018 |
| Small intestinal microbial dysbiosis underlies symptoms associated with functional gastrointestinal disorders GB Saffouri, RR Shields-Cutler, J Chen, Y Yang, HR Lekatz, VL Hale, ... Nature communications 10 (1), 2012, 2019 | 244 | 2019 |
| Antibiotic-induced acceleration of type 1 diabetes alters maturation of innate intestinal immunity XS Zhang, J Li, KA Krautkramer, M Badri, T Battaglia, TC Borbet, H Koh, ... Elife 7, e37816, 2018 | 94 | 2018 |
| Personalized Microbiome Class Students; et al. Daily sampling reveals personalized diet-microbiome associations in humans AJ Johnson, P Vangay, GA Al-Ghalith, BM Hillmann, TL Ward, ... Cell Host Microbe 25 (6), 789-802, 2019 | 82 | 2019 |
| SHI7 is a self-learning pipeline for multipurpose short-read DNA quality control GA Al-Ghalith, B Hillmann, K Ang, R Shields-Cutler, D Knights Msystems 3 (3), 10.1128/msystems. 00202-17, 2018 | 62 | 2018 |
| Human Urinary Composition Controls Antibacterial Activity of Siderocalin*♦ RR Shields-Cutler, JR Crowley, CS Hung, AE Stapleton, CC Aldrich, ... Journal of Biological Chemistry 290 (26), 15949-15960, 2015 | 60 | 2015 |
| SplinectomeR enables group comparisons in longitudinal microbiome studies RR Shields-Cutler, GA Al-Ghalith, M Yassour, D Knights Frontiers in microbiology 9, 785, 2018 | 59 | 2018 |
| SHOGUN: a modular, accurate and scalable framework for microbiome quantification B Hillmann, GA Al-Ghalith, RR Shields-Cutler, Q Zhu, R Knight, D Knights Bioinformatics 36 (13), 4088-4090, 2020 | 43 | 2020 |
| Dysbiosis patterns during re-induction/salvage versus induction chemotherapy for acute leukemia A Rashidi, T Kaiser, R Shields-Cutler, C Graiziger, SG Holtan, ... Scientific reports 9 (1), 6083, 2019 | 41 | 2019 |
| Human metabolome-derived cofactors are required for the antibacterial activity of siderocalin in urine RR Shields-Cutler, JR Crowley, CD Miller, AE Stapleton, W Cui, ... Journal of Biological Chemistry 291 (50), 25901-25910, 2016 | 40 | 2016 |
| Obesity induces gut microbiota alterations and augments acute graft-versus-host disease after allogeneic stem cell transplantation LT Khuat, CT Le, CCS Pai, RR Shields-Cutler, SG Holtan, A Rashidi, ... Science translational medicine 12 (571), eaay7713, 2020 | 34 | 2020 |
| Personalized Microbiome Class Students, Walter J, Menon R, Koecher K, Knights D. 2019. Daily sampling reveals personalized diet-microbiome associations in humans AJ Johnson, P Vangay, GA Al-Ghalith, BM Hillmann, TL Ward, ... Cell Host Microbe 25 (6), 789-802, 0 | 34 | |
| Pretransplant gut colonization with intrinsically vancomycin-resistant enterococci (E. gallinarum and E. casseliflavus) and outcomes of allogeneic hematopoietic cell … A Rashidi, M Ebadi, RR Shields-Cutler, TE DeFor, GA Al-Ghalith, ... Biology of Blood and Marrow Transplantation 24 (6), 1260-1263, 2018 | 21 | 2018 |
| Rapid divergence of two classes of Haemophilus ducreyi EE Ricotta, N Wang, R Cutler, JG Lawrence, TL Humphreys Journal of bacteriology 193 (12), 2941-2947, 2011 | 18 | 2011 |
| Small intestinal microbial dysbiosis underlies symptoms associated with functional gastrointestinal disorders. Nat Commun. 2019; 10 (1): 2012 GB Saffouri, RR Shields-Cutler, J Chen, Y Yang, HR Lekatz, VL Hale, ... External Resources Crossref (DOI), 2021 | 15 | 2021 |
| Bacterial community structure and function distinguish gut sites in captive red‐shanked doucs (Pygathrix nemaeus) JB Clayton, RR Shields‐Cutler, SL Hoops, GA Al‐Ghalith, JCM Sha, ... American journal of primatology 81 (10-11), e22977, 2019 | 15 | 2019 |
| Repeated vaginal exposures to the common cosmetic and household preservative methylisothiazolinone induce persistent, mast cell-dependent genital pain in ND4 mice E Arriaga-Gomez, J Kline, E Emanuel, N Neamonitaki, T Yangdon, ... International journal of molecular sciences 20 (21), 5361, 2019 | 11 | 2019 |
| Evaluating the Information Content of Shallow Shotgun Metagenomics. mSystems 2018; 3 B Hillmann, GA Al-Ghalith, RR Shields-Cutler, Q Zhu, DM Gohl, ... DOI 10, 00069-18, 2018 | 10 | 2018 |
Dan KnightsUniversity of MinnesotaVerified email at umn.edu
