Timothy J Johnson
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The chicken gastrointestinal microbiome
BB Oakley, HS Lillehoj, MH Kogut, WK Kim, JJ Maurer, A Pedroso, ...
FEMS microbiology letters 360 (2), 100-112, 2014
Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies
DM Gohl, P Vangay, J Garbe, A MacLean, A Hauge, A Becker, TJ Gould, ...
Nature biotechnology 34 (9), 942-949, 2016
Pathogenomics of the Virulence Plasmids of Escherichia coli
TJ Johnson, LK Nolan
Microbiology and Molecular Biology Reviews 73 (4), 750-774, 2009
Comparison of Escherichia coli isolates implicated in human urinary tract infection and avian colibacillosis
KE Rodriguez-Siek, CW Giddings, C Doetkott, TJ Johnson, MK Fakhr, ...
Microbiology 151 (6), 2097-2110, 2005
Population dynamics of Salmonella enterica serotypes in commercial egg and poultry production
SL Foley, R Nayak, IB Hanning, TJ Johnson, J Han, SC Ricke
Applied and environmental microbiology 77 (13), 4273-4279, 2011
The Genome Sequence of Avian Pathogenic Escherichia coli Strain O1:K1:H7 Shares Strong Similarities with Human Extraintestinal Pathogenic E. coli Genomes
TJ Johnson, S Kariyawasam, Y Wannemuehler, P Mangiamele, ...
Journal of bacteriology 189 (8), 3228-3236, 2007
Identification of Minimal Predictors of Avian Pathogenic Escherichia coli Virulence for Use as a Rapid Diagnostic Tool
TJ Johnson, Y Wannemuehler, C Doetkott, SJ Johnson, SC Rosenberger, ...
Journal of clinical microbiology 46 (12), 3987-3996, 2008
Captivity humanizes the primate microbiome
JB Clayton, P Vangay, HU Huang, T Ward, BM Hillmann, GA Al-Ghalith, ...
Proceedings of the National Academy of Sciences 113 (37), 10376-10381, 2016
Characterizing the APEC pathotype
K Rodriguez-Siek, L Nolan, C Giddings, C Doetkott, T Johnson
Modulations of the chicken cecal microbiome and metagenome in response to anticoccidial and growth promoter treatment
JL Danzeisen, HB Kim, RE Isaacson, ZJ Tu, TJ Johnson
PloS one 6 (11), e27949, 2011
DNA Sequence of a ColV Plasmid and Prevalence of Selected Plasmid-Encoded Virulence Genes among Avian Escherichia coli Strains
TJ Johnson, KE Siek, SJ Johnson, LK Nolan
Journal of bacteriology 188 (2), 745-758, 2006
Plasmid Replicon Typing of Commensal and Pathogenic Escherichia coli Isolates
TJ Johnson, YM Wannemuehler, SJ Johnson, CM Logue, DG White, ...
Applied and environmental microbiology 73 (6), 1976-1983, 2007
Salmonella pathogenicity and host adaptation in chicken-associated serovars
SL Foley, TJ Johnson, SC Ricke, R Nayak, J Danzeisen
Microbiology and Molecular Biology Reviews 77 (4), 582-607, 2013
Comparison of Extraintestinal Pathogenic Escherichia coli Strains from Human and Avian Sources Reveals a Mixed Subset Representing Potential Zoonotic …
TJ Johnson, Y Wannemuehler, SJ Johnson, AL Stell, C Doetkott, ...
Applied and environmental microbiology 74 (22), 7043-7050, 2008
Piglet gut microbial shifts early in life: causes and effects
RB Guevarra, JH Lee, SH Lee, MJ Seok, DW Kim, BN Kang, TJ Johnson, ...
Journal of animal science and biotechnology 10, 1-10, 2019
Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131
N Stoesser, AE Sheppard, L Pankhurst, N De Maio, CE Moore, R Sebra, ...
MBio 7 (2), 10.1128/mbio. 02162-15, 2016
Expansion of the IncX plasmid family for improved identification and typing of novel plasmids in drug-resistant Enterobacteriaceae
TJ Johnson, EM Bielak, D Fortini, LH Hansen, H Hasman, C Debroy, ...
Plasmid 68 (1), 43-50, 2012
Opioid-induced gut microbial disruption and bile dysregulation leads to gut barrier compromise and sustained systemic inflammation
S Banerjee, G Sindberg, F Wang, J Meng, U Sharma, L Zhang, P Dauer, ...
Mucosal immunology 9 (6), 1418-1428, 2016
Morphine induces changes in the gut microbiome and metabolome in a morphine dependence model
F Wang, J Meng, L Zhang, T Johnson, C Chen, S Roy
Scientific reports 8 (1), 3596, 2018
Evolution of the iss Gene in Escherichia coli
TJ Johnson, YM Wannemuehler, LK Nolan
Applied and environmental microbiology 74 (8), 2360-2369, 2008
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