Zhi Sun
Zhi Sun
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ProteomeXchange provides globally coordinated proteomics data submission and dissemination
JA Vizcaíno, EW Deutsch, R Wang, A Csordas, F Reisinger, D Ríos, ...
Nature biotechnology 32 (3), 223-226, 2014
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition
EW Deutsch, A Csordas, Z Sun, A Jarnuczak, Y Perez-Riverol, T Ternent, ...
Nucleic acids research, gkw936, 2016
A guided tour of the Trans‐Proteomic Pipeline
EW Deutsch, L Mendoza, D Shteynberg, T Farrah, H Lam, N Tasman, ...
Proteomics 10 (6), 1150-1159, 2010
The ProteomeXchange consortium in 2020: enabling ‘big data’approaches in proteomics
EW Deutsch, N Bandeira, V Sharma, Y Perez-Riverol, JJ Carver, ...
Nucleic acids research 48 (D1), D1145-D1152, 2020
iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates
D Shteynberg, EW Deutsch, H Lam, JK Eng, Z Sun, N Tasman, ...
Molecular & cellular proteomics 10 (12), 2011
A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas
T Farrah, EW Deutsch, GS Omenn, DS Campbell, Z Sun, JA Bletz, ...
Molecular & cellular proteomics 10 (9), 2011
A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis
P Picotti, M Clément-Ziza, H Lam, DS Campbell, A Schmidt, EW Deutsch, ...
Nature 494 (7436), 266-270, 2013
Trans‐Proteomic Pipeline, a standardized data processing pipeline for large‐scale reproducible proteomics informatics
EW Deutsch, L Mendoza, D Shteynberg, J Slagel, Z Sun, RL Moritz
PROTEOMICS–Clinical Applications 9 (7-8), 745-754, 2015
Human SRMAtlas: a resource of targeted assays to quantify the complete human proteome
U Kusebauch, DS Campbell, EW Deutsch, CS Chu, DA Spicer, ...
Cell 166 (3), 766-778, 2016
PASSEL: The P eptide A tlas SRM experiment library
T Farrah, EW Deutsch, R Kreisberg, Z Sun, DS Campbell, L Mendoza, ...
Proteomics 12 (8), 1170-1175, 2012
The human plasma proteome draft of 2017: building on the human plasma PeptideAtlas from mass spectrometry and complementary assays
JM Schwenk, GS Omenn, Z Sun, DS Campbell, MS Baker, CM Overall, ...
Journal of proteome research 16 (12), 4299-4310, 2017
The ProteomeXchange consortium at 10 years: 2023 update
EW Deutsch, N Bandeira, Y Perez-Riverol, V Sharma, JJ Carver, ...
Nucleic acids research 51 (D1), D1539-D1548, 2023
The Mtb proteome library: a resource of assays to quantify the complete proteome of Mycobacterium tuberculosis
OT Schubert, J Mouritsen, C Ludwig, HL Röst, G Rosenberger, PK Arthur, ...
Cell host & microbe 13 (5), 602-612, 2013
State of the human proteome in 2013 as viewed through PeptideAtlas: comparing the kidney, urine, and plasma proteomes for the biology-and disease-driven Human Proteome Project
T Farrah, EW Deutsch, GS Omenn, Z Sun, JD Watts, T Yamamoto, ...
Journal of proteome research 13 (1), 60-75, 2014
The state of the human proteome in 2012 as viewed through PeptideAtlas
T Farrah, EW Deutsch, MR Hoopmann, JL Hallows, Z Sun, CY Huang, ...
Journal of proteome research 12 (1), 162-171, 2013
Advances and utility of the human plasma proteome
EW Deutsch, GS Omenn, Z Sun, M Maes, M Pernemalm, KK Palaniappan, ...
Journal of proteome research 20 (12), 5241-5263, 2021
PTMProphet: fast and accurate mass modification localization for the trans-proteomic pipeline
DD Shteynberg, EW Deutsch, DS Campbell, MR Hoopmann, ...
Journal of proteome research 18 (12), 4262-4272, 2019
Using PeptideAtlas, SRMAtlas, and PASSEL: comprehensive resources for discovery and targeted proteomics
U Kusebauch, EW Deutsch, DS Campbell, Z Sun, T Farrah, RL Moritz
Current protocols in bioinformatics 46 (1), 13.25. 1-13.25. 28, 2014
State of the human proteome in 2014/2015 as viewed through PeptideAtlas: enhancing accuracy and coverage through the AtlasProphet
EW Deutsch, Z Sun, D Campbell, U Kusebauch, CS Chu, L Mendoza, ...
Journal of proteome research 14 (9), 3461-3473, 2015
N-glycoprotein SRMAtlas: a resource of mass spectrometric assays for N-glycosites enabling consistent and multiplexed protein quantification for clinical applications
R Huettenhain, S Surinova, R Ossola, Z Sun, D Campbell, F Cerciello, ...
Molecular & Cellular Proteomics 12 (4), 1005-1016, 2013
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