| antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation K Blin, S Shaw, HE Augustijn, ZL Reitz, F Biermann, M Alanjary, A Fetter, ... Nucleic acids research 51 (W1), W46-W50, 2023 | 332 | 2023 |
| MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters BR Terlouw, K Blin, JC Navarro-Muñoz, NE Avalon, MG Chevrette, ... Nucleic acids research 51 (D1), D603-D610, 2023 | 132 | 2023 |
| Influence of the microbiome, diet and genetics on inter-individual variation in the human plasma metabolome L Chen, DV Zhernakova, A Kurilshikov, S Andreu-Sánchez, D Wang, ... Nature medicine 28 (11), 2333-2343, 2022 | 89 | 2022 |
| Characterization of gut microbial structural variations as determinants of human bile acid metabolism D Wang, M Doestzada, L Chen, S Andreu-Sanchez, ... Cell Host & Microbe 29 (12), 1802-1814. e5, 2021 | 52 | 2021 |
| Faecal metabolome and its determinants in inflammatory bowel disease AV Vila, S Hu, S Andreu-Sánchez, V Collij, BH Jansen, HE Augustijn, ... Gut 72 (8), 1472-1485, 2023 | 33 | 2023 |
| gutSMASH predicts specialized primary metabolic pathways from the human gut microbiota V Pascal Andreu, HE Augustijn, L Chen, A Zhernakova, J Fu, ... Nature Biotechnology 41 (10), 1416-1423, 2023 | 28 | 2023 |
| A widely distributed gene cluster compensates for uricase loss in hominids Y Liu, JB Jarman, YS Low, HE Augustijn, S Huang, H Chen, ME DeFeo, ... Cell 186 (16), 3400-3413. e20, 2023 | 21 | 2023 |
| A benchmark of genetic variant calling pipelines using metagenomic short-read sequencing S Andreu-Sánchez, L Chen, D Wang, HE Augustijn, A Zhernakova, J Fu Frontiers in genetics 12, 648229, 2021 | 20 | 2021 |
| BiG-MAP: an automated pipeline to profile metabolic gene cluster abundance and expression in microbiomes V Pascal Andreu, HE Augustijn, K van den Berg, JJJ van der Hooft, ... Msystems 6 (5), 10.1128/msystems. 00937-21, 2021 | 17 | 2021 |
| A systematic analysis of metabolic pathways in the human gut microbiota VP Andreu, HE Augustijn, L Chen, A Zhernakova, J Fu, MA Fischbach, ... bioRxiv, 2021.02. 25.432841, 2021 | 14 | 2021 |
| N.; van Wezel, GP; Medema, MH; Weber, T K Blin, S Shaw, HE Augustijn, ZL Reitz, F Biermann, M Alanjary, A Fetter, ... Nucleic Acids Res 51, W46, 2023 | 9 | 2023 |
| antiSMASH 7.0: New and improved predictions for detection, regulation, chemical structures and visualisation., 2023, 51, pp K Blin, S Shaw, HE Augustijn, ZL Reitz, F Biermann, M Alanjary, A Fetter, ... W46-W50. DOI: https://doi. org/10.1093/nar/gkad344. PMID: https://www. ncbi …, 0 | 7 | |
| Taxonomic and metabolic diversity of Actinobacteria isolated from faeces of a 28,000-year-old mammoth DA van Bergeijk, HE Augustijn, SS Elsayed, J Willemse, VJ Carrión, ... bioRxiv, 2022.12. 22.521380, 2022 | 3 | 2022 |
| Fermo: a dashboard for streamlined rationalized prioritization of molecular features from mass spectrometry data MM Zdouc, LM Bayona Maldonado, HE Augustijn, S Soldatou, ... bioRxiv, 2022.12. 21.521422, 2022 | 2 | 2022 |
| Freedom of expression: A synthetic route to metabolites HE Augustijn, MH Medema Cell 185 (9), 1449-1451, 2022 | 1 | 2022 |
| Gut microbial structural variations as determinants of human bile acid metabolism D Wang, M Doestzada, L Chen, S Andreu-Sánchez, ... bioRxiv, 2021.02. 28.432952, 2021 | 1 | 2021 |
| Harnessing regulatory networks in Actinobacteria for natural product discovery HE Augustijn, AM Roseboom, MH Medema, GP van Wezel Journal of Industrial Microbiology and Biotechnology, kuae011, 2024 | | 2024 |
| LogoMotif: a comprehensive database of transcription factor binding site profiles in Actinobacteria HE Augustijn, D Karapliafis, KMM Joosten, S Rigali, GP van Wezel, ... Journal of Molecular Biology, 168558, 2024 | | 2024 |
| Taxonomic and metabolic diversity of Actinomycetota isolated from faeces of a 28,000‐year‐old mammoth DA van Bergeijk, HE Augustijn, SS Elsayed, J Willemse, VJ Carrión, C Du, ... Environmental Microbiology 26 (2), e16589, 2024 | | 2024 |
| FERMO v. 0.8. 11 M Zdouc, LMB Maldonado, H Augustijn, S Soldatou, N de Jonge, ... | | 2023 |
