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Sridhar Hannenhalli
Sridhar Hannenhalli
Senior Investigator, Cancer Data Science Lab, National Cancer Institute. NIH
Verified email at nih.gov - Homepage
Title
Cited by
Cited by
Year
The sequence of the human genome
JC Venter, MD Adams, EW Myers, PW Li, RJ Mural, GG Sutton, HO Smith, ...
science 291 (5507), 1304-1351, 2001
203062001
Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals
S Hannenhalli, PA Pevzner
Journal of the ACM (JACM) 46 (1), 1-27, 1999
12221999
The evolution of Fox genes and their role in development and disease
S Hannenhalli, KH Kaestner
Nature Reviews Genetics 10 (4), 233-240, 2009
7632009
Genome-wide analysis of retroviral DNA integration
F Bushman, M Lewinski, A Ciuffi, S Barr, J Leipzig, S Hannenhalli, ...
Nature reviews microbiology 3 (11), 848-858, 2005
5352005
Transforming men into mice (polynomial algorithm for genomic distance problem)
S Hannenhalli, PA Pevzner
Proceedings of IEEE 36th annual foundations of computer science, 581-592, 1995
5001995
Retroviral DNA integration: viral and cellular determinants of target-site selection
MK Lewinski, M Yamashita, M Emerman, A Ciuffi, H Marshall, G Crawford, ...
PLoS pathogens 2 (6), e60, 2006
4772006
Genome-wide analysis of chromosomal features repressing human immunodeficiency virus transcription
MK Lewinski, D Bisgrove, P Shinn, H Chen, C Hoffmann, S Hannenhalli, ...
Journal of virology 79 (11), 6610-6619, 2005
3382005
Analysis and prediction of functional sub-types from protein sequence alignments
SS Hannenhalli, RB Russell
Journal of molecular biology 303 (1), 61-76, 2000
3272000
RNA-Seq identifies novel myocardial gene expression signatures of heart failure
Y Liu, M Morley, J Brandimarto, S Hannenhalli, Y Hu, EA Ashley, ...
Genomics 105 (2), 83-89, 2015
2742015
Whole-genome shotgun assembly and comparison of human genome assemblies
S Istrail, GG Sutton, L Florea, AL Halpern, CM Mobarry, R Lippert, ...
Proceedings of the National Academy of Sciences 101 (7), 1916-1921, 2004
2722004
Selection of target sites for mobile DNA integration in the human genome
C Berry, S Hannenhalli, J Leipzig, FD Bushman
PLoS computational biology 2 (11), e157, 2006
2542006
375-Approximation Algorithm for Sorting by Reversals
P Berman, S Hannenhalli, M Karpinski
European Symposium on Algorithms, 200-210, 2002
2442002
Transcriptional genomics associates FOX transcription factors with human heart failure
S Hannenhalli, ME Putt, JM Gilmore, J Wang, MS Parmacek, JA Epstein, ...
Circulation 114 (12), 1269-1276, 2006
2382006
Polynomial-time algorithm for computing translocation distance between genomes
S Hannenhalli
Discrete applied mathematics 71 (1-3), 137-151, 1996
2321996
Urea cycle dysregulation generates clinically relevant genomic and biochemical signatures
JS Lee, L Adler, H Karathia, N Carmel, S Rabinovich, N Auslander, ...
Cell 174 (6), 1559-1570. e22, 2018
2212018
Fast sorting by reversal
P Berman, S Hannenhalli
Annual Symposium on Combinatorial Pattern Matching, 168-185, 1996
2061996
Why transcription factor binding sites are ten nucleotides long
AJ Stewart, S Hannenhalli, JB Plotkin
Genetics 192 (3), 973-985, 2012
1902012
Genome sequence comparison and scenarios for gene rearrangements: A test case
S Hannenhalli, C Chappey, EV Koonin, PA Pevzner
Genomics 30 (2), 299-311, 1995
1801995
Hopx and Hdac2 interact to modulate Gata4 acetylation and embryonic cardiac myocyte proliferation
CM Trivedi, W Zhu, Q Wang, C Jia, HJ Kee, L Li, S Hannenhalli, ...
Developmental cell 19 (3), 450-459, 2010
1732010
Promoter prediction in the human genome
S Hannenhalli, S Levy
Bioinformatics 17 (suppl_1), S90-S96, 2001
1632001
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