Ataur Katebi
Ataur Katebi
Northeastern University
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Protein actions: Principles and modeling
K Dill, RL Jernigan, I Bahar
Garland Science, 2017
The critical role of the loops of triosephosphate isomerase for its oligomerization, dynamics, and functionality
AR Katebi, RL Jernigan
Protein Science 23 (2), 213-228, 2014
A balanced secondary structure predictor
MN Islam, S Iqbal, AR Katebi, MT Hoque
Journal of theoretical biology 389, 60-71, 2016
The importance of slow motions for protein functional loops
A Skliros, MT Zimmermann, D Chakraborty, S Saraswathi, AR Katebi, ...
Physical biology 9 (1), 014001, 2012
Topological diversity of chromatin fibers: Interplay between nucleosome repeat length, DNA linking number and the level of transcription
D Norouzi, A Katebi, F Cui, VB Zhurkin
AIMS biophysics 2 (4), 613, 2015
The use of experimental structures to model protein dynamics
AR Katebi, K Sankar, K Jia, RL Jernigan
Molecular Modeling of Proteins, 213-236, 2015
Structural interpretation of protein-protein interaction network
AR Katebi, A Kloczkowski, RL Jernigan
BMC structural biology 10 (1), 1-11, 2010
NetAct: a computational platform to construct core transcription factor regulatory networks using gene activity
K Su, A Katebi, V Kohar, B Clauss, D Gordin, ZS Qin, RKM Karuturi, S Li, ...
Genome Biology 23 (1), 1-21, 2022
Aldolases utilize different oligomeric states to preserve their functional dynamics
AR Katebi, RL Jernigan
Biochemistry 54 (22), 3543-3554, 2015
Computational systems‐biology approaches for modeling gene networks driving epithelial–mesenchymal transitions
A Katebi, D Ramirez, M Lu
Computational and systems oncology 1 (2), e1021, 2021
Discovery of functional motifs from the interface region of oligomeric proteins using frequent subgraph mining
TK Saha, A Katebi, W Dhifli, M Al Hasan
IEEE/ACM transactions on computational biology and bioinformatics 16 (5 …, 2017
Random parametric perturbations of gene regulatory circuit uncover state transitions in cell cycle
A Katebi, V Kohar, M Lu
Iscience 23 (6), 2020
Immunological implications of a structural analysis of two different porcine IL1β proteins expressed in macrophages and embryos
AR Katebi, P Gniewek, M Zimmermann, S Saraswathi, Z Gong, CK Tuggle, ...
Proceedings of the First ACM International Conference on Bioinformatics and …, 2010
AGRN: accurate gene regulatory network inference using ensemble machine learning methods
DM Alawad, A Katebi, MWU Kabir, MT Hoque
Bioinformatics Advances 3 (1), vbad032, 2023
Gene Circuit Explorer (GeneEx): an interactive web-app for visualizing, simulating and analyzing gene regulatory circuits
V Kohar, D Gordin, A Katebi, H Levine, JN Onuchic, M Lu
Bioinformatics 37 (9), 1327-1329, 2021
Modeling a gene regulatory network of EMT hybrid states for mouse embryonic skin cells
D Ramirez, V Kohar, A Katebi, M Lu
bioRxiv, 799908, 2019
Building and simulating protein machines
AR Katebi
Iowa State University, 2013
Computational testing of protein-protein interactions
AR Katebi, A Kloczkowski, RL Jeringan
2009 IEEE International Conference on Bioinformatics and Biomedicine …, 2009
Supporting Snapshots in a Log-based File System
AR Katebi
University of Florida, 2004
Data-driven modeling of core gene regulatory network underlying leukemogenesis in IDH mutant AML
A Katebi, X Chen, S Li, M Lu
bioRxiv, 2023
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