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Zachary D Kurtz
Zachary D Kurtz
Ginkgo Bioworks
Verified email at ginkgobioworks.com
Title
Cited by
Cited by
Year
Sparse and compositionally robust inference of microbial ecological networks
ZD Kurtz, CL Müller, ER Miraldi, DR Littman, MJ Blaser, RA Bonneau
PLoS computational biology 11 (5), e1004226, 2015
12312015
Helminth infection promotes colonization resistance via type 2 immunity
D Ramanan, R Bowcutt, SC Lee, MS Tang, ZD Kurtz, Y Ding, K Honda, ...
Science 352 (6285), 608-612, 2016
3942016
Alternatively activated macrophages derived from monocytes and tissue macrophages are phenotypically and functionally distinct
UM Gundra, NM Girgis, D Ruckerl, S Jenkins, LN Ward, ZD Kurtz, ...
Blood, The Journal of the American Society of Hematology 123 (20), e110-e122, 2014
3762014
Helminth Colonization Is Associated with Increased Diversity of the Gut Microbiota
SC Lee, MS Tang, YAL Lim, SH Choy, ZD Kurtz, LM Cox, UM Gundra, ...
PLoS Neglected Tropical Diseases 8 (5), e2880, 2014
3702014
Antibiotic perturbation of the murine gut microbiome enhances the adiposity, insulin resistance, and liver disease associated with high-fat diet
D Mahana, CM Trent, ZD Kurtz, NA Bokulich, T Battaglia, J Chung, ...
Genome medicine 8, 1-20, 2016
1762016
Fungi stabilize connectivity in the lung and skin microbial ecosystems
L Tipton, CL Müller, ZD Kurtz, L Huang, E Kleerup, A Morris, R Bonneau, ...
Microbiome 6, 1-14, 2018
1562018
A single early-in-life macrolide course has lasting effects on murine microbial network topology and immunity
VE Ruiz, T Battaglia, ZD Kurtz, L Bijnens, A Ou, I Engstrand, X Zheng, ...
Nature communications 8 (1), 518, 2017
1172017
Roles of putative type II secretion and type IV pilus systems in the virulence of uropathogenic Escherichia coli
R Kulkarni, BK Dhakal, ES Slechta, Z Kurtz, MA Mulvey, DG Thanassi
PLoS One 4 (3), e4752, 2009
882009
Oxalobacter formigenes-associated host features and microbial community structures examined using the American Gut Project
M Liu, H Koh, ZD Kurtz, T Battaglia, A PeBenito, H Li, L Nazzal, MJ Blaser
Microbiome 5, 1-17, 2017
632017
Shrinkage improves estimation of microbial associations under different normalization methods
M Badri, ZD Kurtz, R Bonneau, CL Müller
NAR genomics and bioinformatics 2 (4), lqaa100, 2020
42*2020
Lung microbiome and host immune tone in subjects with idiopathic pulmonary fibrosis treated with inhaled interferon-γ
J Wang, M Lesko, MH Badri, BC Kapoor, BG Wu, Y Li, GC Smaldone, ...
ERJ open research 3 (3), 2017
322017
Disentangling microbial associations from hidden environmental and technical factors via latent graphical models
ZD Kurtz, R Bonneau, CL Müller
BioRxiv, 2019.12. 21.885889, 2019
182019
Generalized stability approach for regularized graphical models
CL Müller, R Bonneau, Z Kurtz
arXiv preprint arXiv:1605.07072, 2016
182016
Glycosuria alters uropathogenic Escherichia coli global gene expression and virulence
MJ Islam, K Bagale, PP John, Z Kurtz, R Kulkarni
mSphere, e00004-22, 2022
62022
Precision Discovery of Novel Inhibitors of Human Cancer Target HsMetAP1 from Vast Unexplored Metagenomic Diversity
OW Liu, S Akers, G Alvarez, S Brown, W Cai, Z Charlop-Powers, ...
bioRxiv, 2022.06. 11.495772, 2022
12022
Correction: helminth colonization is associated with increased diversity of the gut microbiota
SC Lee, MS Tang, YAL Lim, SH Choy, ZD Kurtz, LM Cox, UM Gundra, ...
PLoS neglected tropical diseases 15 (4), e0009325, 2021
12021
Methods and apparatus for efficient and accurate assembly of long-read genomic sequences
Z Charlop-powers, ZD Kurtz, BM Hover, SL Colletti
US Patent App. 17/797,317, 2023
2023
Lower Airway Microbiota Is Associated With Persistent Inflammation In The Lower Airways During Anti-Inflammatory Therapy With Inhaled Interferon-Gamma
MB Lesko, J Wang, MH Badri, B Kapoor, Y Li, GC Smaldone, Z Kurtz, ...
B21. ALTERATIONS IN MICROBIOME AND VIROME IN LUNG DISEASE, A2933-A2933, 2017
2017
Helminth colonization is associated with increased diversity of the gut microbiota.
LSC Lee SooChing, TMS Tang MeiSan, YAL Lim, CSH Choy SeowHuey, ...
2014
pulsar v0.3.4
Z Kurtz
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Articles 1–20