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Zhenjiang Zech Xu
Zhenjiang Zech Xu
state key lab of food science and resources, nu
Verified email at ucsd.edu
Title
Cited by
Cited by
Year
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
143462019
A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 457-463, 2017
22782017
Normalization and microbial differential abundance strategies depend upon data characteristics
S Weiss, ZZ Xu, S Peddada, A Amir, K Bittinger, A Gonzalez, C Lozupone, ...
Microbiome 5, 1-18, 2017
17412017
Best practices for analysing microbiomes
R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ...
Nature Reviews Microbiology 16 (7), 410-422, 2018
15072018
Deblur rapidly resolves single-nucleotide community sequence patterns
A Amir, D McDonald, JA Navas-Molina, E Kopylova, JT Morton, Z Zech Xu, ...
MSystems 2 (2), 10.1128/msystems. 00191-16, 2017
13942017
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
9572018
Meta-analyses of human gut microbes associated with obesity and IBD
WA Walters, Z Xu, R Knight
FEBS letters 588 (22), 4223-4233, 2014
9402014
Microbiome-wide association studies link dynamic microbial consortia to disease
JA Gilbert, RA Quinn, J Debelius, ZZ Xu, J Morton, N Garg, JK Jansson, ...
Nature 535 (7610), 94-103, 2016
7332016
American gut: an open platform for citizen science microbiome research
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
Msystems 3 (3), 10.1128/msystems. 00031-18, 2018
6812018
Correlation detection strategies in microbial data sets vary widely in sensitivity and precision
S Weiss, W Van Treuren, C Lozupone, K Faust, J Friedman, Y Deng, ...
The ISME journal 10 (7), 1669-1681, 2016
6812016
Advancing Our Understanding of the Human Microbiome Using QIIME.
JA Navas-Molina, JM Peralta-Sanchezl, A Gonzalezl, PJ McMurdieI, ...
Methods in Enzymology, 371, 2013
6422013
Subsistence strategies in traditional societies distinguish gut microbiomes
AJ Obregon-Tito, RY Tito, J Metcalf, K Sankaranarayanan, JC Clemente, ...
Nature communications 6 (1), 6505, 2015
5332015
Dietary effects on human gut microbiome diversity
Z Xu, R Knight
British Journal of Nutrition 113 (S1), S1-S5, 2015
5112015
Microbial community assembly and metabolic function during mammalian corpse decomposition
JL Metcalf, ZZ Xu, S Weiss, S Lax, W Van Treuren, ER Hyde, SJ Song, ...
Science 351 (6269), 158-162, 2016
5022016
Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism
A Zarrinpar, A Chaix, ZZ Xu, MW Chang, CA Marotz, A Saghatelian, ...
Nature communications 9 (1), 2872, 2018
4302018
Preservation methods differ in fecal microbiome stability, affecting suitability for field studies
SJ Song, A Amir, JL Metcalf, KR Amato, ZZ Xu, G Humphrey, R Knight
MSystems 1 (3), 10.1128/msystems. 00021-16, 2016
400*2016
Phylogenetic placement of exact amplicon sequences improves associations with clinical information
S Janssen, D McDonald, A Gonzalez, JA Navas-Molina, L Jiang, ZZ Xu, ...
Msystems 3 (3), 10.1128/msystems. 00021-18, 2018
3622018
Gut microbiota from green tea polyphenol-dosed mice improves intestinal epithelial homeostasis and ameliorates experimental colitis
Z Wu, S Huang, T Li, N Li, D Han, B Zhang, ZZ Xu, S Zhang, J Pang, ...
Microbiome 9, 1-22, 2021
3292021
Normalization and microbial differential abundance strategies depend upon data characteristics. Microbiome 5: 27
S Weiss, ZZ Xu, S Peddada, A Amir, K Bittinger, A Gonzalez, C Lozupone, ...
3052017
A gut microbiome signature for cirrhosis due to nonalcoholic fatty liver disease
C Caussy, A Tripathi, G Humphrey, S Bassirian, S Singh, C Faulkner, ...
Nature communications 10 (1), 1406, 2019
2762019
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