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Rebecca E. Colman
Rebecca E. Colman
Verified email at ucsd.edu
Title
Cited by
Cited by
Year
World health statistics 2010
World Health Organization
World Health Organization, 2010
2113*2010
Best practices for evaluating single nucleotide variant calling methods for microbial genomics
ND Olson, SP Lund, RE Colman, JT Foster, JW Sahl, JM Schupp, P Keim, ...
Frontiers in genetics 6, 235, 2015
1762015
Within-Host Evolution of Burkholderia pseudomallei in Four Cases of Acute Melioidosis
EP Price, HM Hornstra, D Limmathurotsakul, TL Max, DS Sarovich, ...
PLoS pathogens 6 (1), e1000725, 2010
1622010
Effect of Repeat Copy Number on Variable-Number Tandem Repeat Mutations in Escherichia coli O157:H7
AJ Vogler, C Keys, Y Nemoto, RE Colman, Z Jay, P Keim
Journal of bacteriology 188 (12), 4253-4263, 2006
1342006
Detection of low-level mixed-population drug resistance in Mycobacterium tuberculosis using high fidelity amplicon sequencing
RE Colman, JM Schupp, ND Hicks, DE Smith, JL Buchhagen, F Valafar, ...
PloS one 10 (5), e0126626, 2015
862015
Rapid drug susceptibility testing of drug-resistant Mycobacterium tuberculosis isolates directly from clinical samples by use of amplicon sequencing: a proof-of-concept study
RE Colman, J Anderson, D Lemmer, E Lehmkuhl, SB Georghiou, ...
Journal of clinical microbiology 54 (8), 2058-2067, 2016
782016
Whole Genome Sequence Typing to Investigate the Apophysomyces Outbreak following a Tornado in Joplin, Missouri, 2011
KA Etienne, J Gillece, R Hilsabeck, JM Schupp, R Colman, SR Lockhart, ...
PLoS One 7 (11), e49989, 2012
672012
Comparison of TaqMan PCR assays for detection of the melioidosis agent Burkholderia pseudomallei in clinical specimens
M Kaestli, LJ Richardson, RE Colman, A Tuanyok, EP Price, JR Bowers, ...
Journal of Clinical Microbiology 50 (6), 2059-2062, 2012
632012
Comparison of TaqMan PCR assays for detection of the melioidosis agent Burkholderia pseudomallei in clinical specimens
M Kaestli, LJ Richardson, RE Colman, A Tuanyok, EP Price, JR Bowers, ...
Journal of Clinical Microbiology 50 (6), 2059-2062, 2012
632012
Phylogenetic and genomic diversity in isolates from the globally distributed Acinetobacter baumannii ST25 lineage
JW Sahl, M Del Franco, S Pournaras, RE Colman, N Karah, L Dijkshoorn, ...
Scientific reports 5 (1), 1-12, 2015
532015
The effects of signal erosion and core genome reduction on the identification of diagnostic markers
JW Sahl, AJ Vazquez, CM Hall, JD Busch, A Tuanyok, M Mayo, ...
MBio 7 (5), e00846-16, 2016
492016
Cryptic Microheteroresistance Explains Mycobacterium tuberculosis Phenotypic Resistance
JZ Metcalfe, E Streicher, G Theron, RE Colman, C Allender, D Lemmer, ...
American journal of respiratory and critical care medicine 196 (9), 1191-1201, 2017
432017
Whole-genome and targeted sequencing of drug-resistant Mycobacterium tuberculosis on the iSeq100 and MiSeq: A performance, ease-of-use, and cost evaluation
RE Colman, A Mace, M Seifert, J Hetzel, H Mshaiel, A Suresh, D Lemmer, ...
PLoS medicine 16 (4), e1002794, 2019
412019
Phylogenetically typing bacterial strains from partial SNP genotypes observed from direct sequencing of clinical specimen metagenomic data
JW Sahl, JM Schupp, DA Rasko, RE Colman, JT Foster, P Keim
Genome medicine 7 (1), 1-13, 2015
342015
Mixed Mycobacterium tuberculosis–Strain Infections Are Associated With Poor Treatment Outcomes Among Patients With Newly Diagnosed Tuberculosis …
SS Shin, C Modongo, Y Baik, C Allender, D Lemmer, RE Colman, ...
The Journal of infectious diseases 218 (12), 1974-1982, 2018
322018
Mycobacterium tuberculosis subculture results in loss of potentially clinically relevant heteroresistance
JZ Metcalfe, E Streicher, G Theron, RE Colman, R Penaloza, C Allender, ...
Antimicrobial agents and chemotherapy 61 (11), e00888-17, 2017
322017
Genomic characterization of Burkholderia pseudomallei isolates selected for medical countermeasures testing: comparative genomics associated with differential virulence
JW Sahl, CJ Allender, RE Colman, KJ Califf, JM Schupp, BJ Currie, ...
PLoS One 10 (3), e0121052, 2015
302015
Diverse Burkholderia Species Isolated from Soils in the Southern United States with No Evidence of B. pseudomallei
CM Hall, JD Busch, K Shippy, CJ Allender, M Kaestli, M Mayo, JW Sahl, ...
PLoS One 10 (11), e0143254, 2015
272015
Fine-scale identification of the most likely source of a human plague infection
RE Colman, AJ Vogler, JL Lowell, KL Gage, C Morway, PJ Reynolds, ...
Emerging infectious diseases 15 (10), 1623, 2009
212009
Application of targeted next-generation sequencing assay on a portable sequencing platform for culture-free detection of drug-resistant tuberculosis from clinical samples
AM Cabibbe, A Spitaleri, S Battaglia, RE Colman, A Suresh, S Uplekar, ...
Journal of clinical microbiology 58 (10), e00632-20, 2020
202020
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