Rebecca E. Colman
Rebecca E. Colman
Verified email at ucsd.edu
Title
Cited by
Cited by
Year
Practical handbook of microbiology
E Goldman, LH Green
CRC press, 2015
4492015
Best practices for evaluating single nucleotide variant calling methods for microbial genomics
ND Olson, SP Lund, RE Colman, JT Foster, JW Sahl, JM Schupp, P Keim, ...
Frontiers in genetics 6, 235, 2015
1462015
Effect of Repeat Copy Number on Variable-Number Tandem Repeat Mutations in Escherichia coli O157:H7
AJ Vogler, C Keys, Y Nemoto, RE Colman, Z Jay, P Keim
Journal of bacteriology 188 (12), 4253-4263, 2006
1252006
Within-Host Evolution of Burkholderia pseudomallei in Four Cases of Acute Melioidosis
EP Price, HM Hornstra, D Limmathurotsakul, TL Max, DS Sarovich, ...
PLoS pathogens 6 (1), e1000725, 2010
692010
Rapid drug susceptibility testing of drug-resistant Mycobacterium tuberculosis isolates directly from clinical samples by use of amplicon sequencing: a proof-of-concept study
RE Colman, J Anderson, D Lemmer, E Lehmkuhl, SB Georghiou, ...
Journal of clinical microbiology 54 (8), 2058-2067, 2016
662016
Detection of low-level mixed-population drug resistance in Mycobacterium tuberculosis using high fidelity amplicon sequencing
RE Colman, JM Schupp, ND Hicks, DE Smith, JL Buchhagen, F Valafar, ...
PloS one 10 (5), e0126626, 2015
662015
Whole genome sequence typing to investigate the Apophysomyces outbreak following a tornado in Joplin, Missouri, 2011
KA Etienne, J Gillece, R Hilsabeck, JM Schupp, R Colman, SR Lockhart, ...
PloS one 7 (11), e49989, 2012
652012
Comparison of TaqMan PCR assays for detection of the melioidosis agent Burkholderia pseudomallei in clinical specimens
M Kaestli, LJ Richardson, RE Colman, A Tuanyok, EP Price, JR Bowers, ...
Journal of Clinical Microbiology 50 (6), 2059-2062, 2012
562012
Comparison of TaqMan PCR assays for detection of the melioidosis agent Burkholderia pseudomallei in clinical specimens
M Kaestli, LJ Richardson, RE Colman, A Tuanyok, EP Price, JR Bowers, ...
Journal of Clinical Microbiology 50 (6), 2059-2062, 2012
562012
Phylogenetic and genomic diversity in isolates from the globally distributed Acinetobacter baumannii ST25 lineage
JW Sahl, M Del Franco, S Pournaras, RE Colman, N Karah, L Dijkshoorn, ...
Scientific reports 5 (1), 1-12, 2015
462015
Cryptic Microheteroresistance Explains Mycobacterium tuberculosis Phenotypic Resistance
JZ Metcalfe, E Streicher, G Theron, RE Colman, C Allender, D Lemmer, ...
American journal of respiratory and critical care medicine 196 (9), 1191-1201, 2017
372017
The effects of signal erosion and core genome reduction on the identification of diagnostic markers
JW Sahl, AJ Vazquez, CM Hall, JD Busch, A Tuanyok, M Mayo, ...
MBio 7 (5), e00846-16, 2016
372016
Phylogenetically typing bacterial strains from partial SNP genotypes observed from direct sequencing of clinical specimen metagenomic data
JW Sahl, JM Schupp, DA Rasko, RE Colman, JT Foster, P Keim
Genome medicine 7 (1), 1-13, 2015
332015
Genomic characterization of Burkholderia pseudomallei isolates selected for medical countermeasures testing: comparative genomics associated with differential virulence
JW Sahl, CJ Allender, RE Colman, KJ Califf, JM Schupp, BJ Currie, ...
PLoS One 10 (3), e0121052, 2015
282015
Mycobacterium tuberculosis subculture results in loss of potentially clinically relevant heteroresistance
JZ Metcalfe, E Streicher, G Theron, RE Colman, R Penaloza, C Allender, ...
Antimicrobial agents and chemotherapy 61 (11), e00888-17, 2017
272017
Mixed Mycobacterium tuberculosis–Strain Infections Are Associated With Poor Treatment Outcomes Among Patients With Newly Diagnosed Tuberculosis …
SS Shin, C Modongo, Y Baik, C Allender, D Lemmer, RE Colman, ...
The Journal of infectious diseases 218 (12), 1974-1982, 2018
252018
Whole-genome and targeted sequencing of drug-resistant Mycobacterium tuberculosis on the iSeq100 and MiSeq: A performance, ease-of-use, and cost evaluation
RE Colman, A Mace, M Seifert, J Hetzel, H Mshaiel, A Suresh, D Lemmer, ...
PLoS medicine 16 (4), e1002794, 2019
242019
Diverse Burkholderia Species Isolated from Soils in the Southern United States with No Evidence of B. pseudomallei
CM Hall, JD Busch, K Shippy, CJ Allender, M Kaestli, M Mayo, JW Sahl, ...
PLoS One 10 (11), e0143254, 2015
222015
Fine-scale identification of the most likely source of a human plague infection
RE Colman, AJ Vogler, JL Lowell, KL Gage, C Morway, PJ Reynolds, ...
Emerging infectious diseases 15 (10), 1623, 2009
222009
Next-generation sequencing-based user-friendly platforms for drug-resistant tuberculosis diagnosis: a promise for the near future
DL Dolinger, RE Colman, DM Engelthaler, TC Rodwell
International journal of mycobacteriology 5, S27-S28, 2016
172016
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