| A pan-genome-based machine learning approach for predicting antimicrobial resistance activities of the Escherichia coli strains HL Her, YW Wu Bioinformatics 34 (13), i89-i95, 2018 | 94 | 2018 |
| Proteomic discovery of chemical probes that perturb protein complexes in human cells MR Lazear, JR Remsberg, MG Jaeger, K Rothamel, H Her, KE DeMeester, ... Molecular Cell 83 (10), 1725-1742. e12, 2023 | 35 | 2023 |
| Inferring a spatial code of cell-cell interactions across a whole animal body E Armingol, A Ghaddar, CJ Joshi, H Baghdassarian, I Shamie, J Chan, ... PLoS computational biology 18 (11), e1010715, 2022 | 29 | 2022 |
| Remodeling oncogenic transcriptomes by small molecules targeting NONO SG Kathman, SJ Koo, GL Lindsey, HL Her, SM Blue, H Li, S Jaensch, ... Nature chemical biology 19 (7), 825-836, 2023 | 20 | 2023 |
| Using time-frequency features to recognize abnormal heart sounds H Her, HW Chiu 2016 Computing in Cardiology Conference (CinC), 1145-1147, 2016 | 16 | 2016 |
| Multiplexed transcriptome discovery of RNA-binding protein binding sites by antibody-barcode eCLIP DA Lorenz, HL Her, KA Shen, K Rothamel, KR Hutt, AC Nojadera, ... Nature methods 20 (1), 65-69, 2023 | 9 | 2023 |
| PangenomeNet: a pan-genome-based network reveals functional modules on antimicrobial resistome for Escherichia coli strains HL Her, PT Lin, YW Wu BMC bioinformatics 22, 1-19, 2021 | 9 | 2021 |
| Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions JS Xiang, JR Mueller, EC Luo, BA Yee, D Schafer, JC Schmok, FE Tan, ... Research Square, 2022 | 5 | 2022 |
| Metadensity: a background-aware python pipeline for summarizing CLIP signals on various transcriptomic sites HL Her, E Boyle, GW Yeo Bioinformatics Advances 2 (1), vbac083, 2022 | 5 | 2022 |
| Skipper analysis of eCLIP datasets enables sensitive detection of constrained translation factor binding sites EA Boyle, HL Her, JR Mueller, JT Naritomi, GG Nguyen, GW Yeo Cell Genomics 3 (6), 2023 | 4 | 2023 |
| LARP4 is an RNA-binding protein that binds nuclear-encoded mitochondrial mRNAs to promote mitochondrial function BM Lewis, CY Cho, HL Her, O Mizrahi, T Hunter, GW Yeo RNA 30 (3), 223-239, 2024 | 3 | 2024 |
| Skipper analysis of RNA-protein interactions highlights depletion of genetic variation in translation factor binding sites EA Boyle, HL Her, JR Mueller, GG Nguyen, GW Yeo bioRxiv, 2022.10. 08.511447, 2022 | 2 | 2022 |
| Discovery and functional interrogation of the virus and host RNA interactome of SARS-Cov-2 proteins JS Xiang, JR Mueller, EC Luo, B Yee, D Schafer, JC Schmok, FE Tan, ... | 2 | 2021 |
| Large-scale evaluation of the ability of RNA-binding proteins to activate exon inclusion JC Schmok, M Jain, LA Street, AT Tankka, D Schafer, HL Her, ... Nature biotechnology, 1-13, 2024 | 1 | 2024 |
| Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions (preprint) JS Xiang, JR Mueller, EC Luo, BA Yee, D Schafer, JC Schmok, FE Tan, ... | | 2022 |
| Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions (preprint) G Yeo, J Xiang, J Mueller, EC Luo, B Yee, D Schafer, J Schmok, F Tan, ... | | 2022 |
| Discovery and Functional Interrogation of the Virus and Host RNA Interactome of SARS-Cov-2 Proteins (preprint) JS Xiang, JR Mueller, EC Luo, B Yee, D Schafer, JC Schmok, FE Tan, ... | | 2021 |
