Aude Bernheim
Aude Bernheim
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CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
D Couvin, A Bernheim, C Toffano-Nioche, M Touchon, J Michalik, ...
Nucleic acids research 46 (W1), W246-W251, 2018
Genetic and life-history traits associated with the distribution of prophages in bacteria
M Touchon, A Bernheim, EPC Rocha
The ISME journal 10 (11), 2744-2754, 2016
The pan-immune system of bacteria: antiviral defence as a community resource
A Bernheim, R Sorek
Nature Reviews Microbiology 18 (2), 113-119, 2020
Bacterial retrons function in anti-phage defense
A Millman, A Bernheim, A Stokar-Avihail, T Fedorenko, M Voichek, ...
Cell 183 (6), 1551-1561. e12, 2020
Prokaryotic viperins produce diverse antiviral molecules
A Bernheim, A Millman, G Ofir, G Meitav, C Avraham, H Shomar, ...
Nature 589 (7840), 120-124, 2021
A eukaryotic-like serine/threonine kinase protects staphylococci against phages
F Depardieu, JP Didier, A Bernheim, A Sherlock, H Molina, B Duclos, ...
Cell host & microbe 20 (4), 471-481, 2016
Inhibition of NHEJ repair by type II-A CRISPR-Cas systems in bacteria
A Bernheim, A Calvo-Villamañán, C Basier, L Cui, EPC Rocha, ...
Nature communications 8 (1), 1-9, 2017
Genetic exchanges are more frequent in bacteria encoding capsules
O Rendueles, JAM de Sousa, A Bernheim, M Touchon, EPC Rocha
PLoS genetics 14 (12), e1007862, 2018
Silencing of Antibiotic Resistance in E. coli with Engineered Phage Bearing Small Regulatory RNAs
VK Libis, AG Bernheim, C Basier, S Jaramillo-Riveri, M Deyell, ...
ACS synthetic biology 3 (12), 1003-1006, 2014
Atypical organizations and epistatic interactions of CRISPRs and cas clusters in genomes and their mobile genetic elements
A Bernheim, D Bikard, M Touchon, EPC Rocha
Nucleic acids research 48 (2), 748-760, 2020
Systematic and quantitative view of the antiviral arsenal of prokaryotes
F Tesson, A Hervé, E Mordret, M Touchon, C d’Humières, J Cury, ...
Nature communications 13 (1), 1-10, 2022
A matter of background: DNA repair pathways as a possible cause for the sparse distribution of CRISPR-Cas systems in bacteria
A Bernheim, D Bikard, M Touchon, EPC Rocha
Philosophical Transactions of the Royal Society B 374 (1772), 20180088, 2019
Phages and their satellites encode hotspots of antiviral systems
F Rousset, F Depardieu, S Miele, J Dowding, AL Laval, E Lieberman, ...
Cell host & microbe 30 (5), 740-753. e5, 2022
Viruses cooperate to defeat bacteria
A Bernheim, R Sorek
Nature 559 (7715), 482-484, 2018
Phage-mediated delivery of targeted sRNA constructs to knock down gene expression in E. coli
AG Bernheim, VK Libis, AB Lindner, EH Wintermute
JoVE (Journal of Visualized Experiments), e53618, 2016
Evolutionary and mechanistic diversity of Type IF CRISPR-associated transposons
SE Klompe, N Jaber, LY Beh, JT Mohabir, A Bernheim, SH Sternberg
Molecular Cell 82 (3), 616-628. e5, 2022
Multiple phage resistance systems inhibit infection via SIR2-dependent NAD+ depletion
J Garb, A Lopatina, A Bernheim, M Zaremba, V Siksnys, S Melamed, ...
bioRxiv, 2021
In Situ Characterization of Mycobacterial Growth Inhibition by Lytic Enzymes Expressed in Vectorized E. coli
I Atanaskovic, AC Bencherif, M Deyell, S Jaramillo-Riveri, M Benony, ...
ACS synthetic biology 3 (12), 932-934, 2014
Engineering gene overlaps to sustain genetic constructs in vivo
AL Decrulle, A Frénoy, TA Meiller-Legrand, A Bernheim, C Lotton, ...
PLoS computational biology 17 (10), e1009475, 2021
An expanding arsenal of immune systems that protect bacteria from phages
A Millman, S Melamed, A Leavitt, S Doron, A Bernheim, J Hör, A Lopatina, ...
bioRxiv, 2022
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