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David Andrew Eccles
David Andrew Eccles
Bioinformatics Research Analyst, Gringene Bioinformatics
Verified email at gringene.org
Title
Cited by
Cited by
Year
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
BJ Haas, A Papanicolaou, M Yassour, M Grabherr, PD Blood, J Bowden, ...
Nature protocols 8 (8), 1494-1512, 2013
75592013
Predicting protein structures with a multiplayer online game
S Cooper, F Khatib, A Treuille, J Barbero, J Lee, M Beenen, A Leaver-Fay, ...
Nature 466 (7307), 756-760, 2010
19652010
Mitochondrial Genome Acquisition Restores Respiratory Function and Tumorigenic Potential of Cancer Cells without Mitochondrial DNA
AS Tan, JW Baty, LF Dong, A Bezawork-Geleta, B Endaya, J Goodwin, ...
Cell metabolism 21 (1), 81-94, 2015
6962015
MinION Analysis and Reference Consortium: Phase 1 data release and analysis
CLC Ip, M Loose, JR Tyson, M de Cesare, BL Brown, M Jain, RM Leggett, ...
F1000Research 4, 2015
3172015
An analysis of DNA methylation in human adipose tissue reveals differential modification of obesity genes before and after gastric bypass and weight loss
MC Benton, A Johnstone, D Eccles, B Harmon, MT Hayes, RA Lea, ...
Genome biology 16 (1), 8, 2015
2512015
MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9. 0 chemistry
M Jain, JR Tyson, M Loose, CLC Ip, DA Eccles, J O'Grady, S Malla, ...
F1000Research 6, 2017
1372017
MinION nanopore sequencing of an influenza genome
J Wang, NE Moore, YM Deng, DA Eccles, RJ Hall
Frontiers in microbiology 6, 766, 2015
1322015
Metastatic susceptibility locus, an 8p hot-spot for tumour progression disrupted in colorectal liver metastases: 13 candidate genes examined at the DNA, mRNA and protein level
DP Macartney-Coxson, KA Hood, H Shi, T Ward, A Wiles, R O'Connor, ...
BMC cancer 8 (1), 1-11, 2008
1042008
Associations of autozygosity with a broad range of human phenotypes
DW Clark, Y Okada, KHS Moore, D Mason, N Pirastu, I Gandin, ...
Nature communications 10 (1), 4957, 2019
852019
Tree Lab: Portable genomics for early detection of plant viruses and pests in Sub-Saharan Africa
LM Boykin, P Sseruwagi, T Alicai, E Ateka, IU Mohammed, JAL Stanton, ...
Genes 10 (9), 632, 2019
762019
Th2 responses are primed by skin dendritic cells with distinct transcriptional profiles
LM Connor, SC Tang, E Cognard, S Ochiai, KL Hilligan, SI Old, ...
Journal of Experimental Medicine 214 (1), 125-142, 2017
762017
β-Catenin-Dependent Control of Positional Information along the AP Body Axis in Planarians Involves a Teashirt Family Member
H Reuter, M März, MC Vogg, D Eccles, L Grífol-Boldú, D Wehner, ...
Cell reports 10 (2), 253-265, 2015
762015
Testing the thrifty gene hypothesis: the Gly482Ser variant in PPARGC1A is associated with BMI in Tongans
S Myles, RA Lea, J Ohashi, GK Chambers, JG Weiss, E Hardouin, ...
BMC medical genetics 12 (1), 10, 2011
652011
Harnessing the MinION: An example of how to establish long‐read sequencing in a laboratory using challenging plant tissue from Eucalyptus pauciflora
M Schalamun, R Nagar, D Kainer, E Beavan, D Eccles, JP Rathjen, ...
Molecular ecology resources 19 (1), 77-89, 2019
642019
Homeostatic IL-13 in healthy skin directs dendritic cell differentiation to promote TH2 and inhibit TH17 cell polarization
JU Mayer, KL Hilligan, JS Chandler, DA Eccles, SI Old, RG Domingues, ...
Nature immunology 22 (12), 1538-1550, 2021
592021
Complete mitochondrial genome sequencing reveals novel haplotypes in a Polynesian population
M Benton, D Macartney-Coxson, D Eccles, L Griffiths, G Chambers, R Lea
PloS one 7 (4), e35026, 2012
552012
The p. Ala510Val mutation in the SPG7 (paraplegin) gene is the most common mutation causing adult onset neurogenetic disease in patients of British ancestry
RH Roxburgh, R Marquis-Nicholson, F Ashton, AM George, RA Lea, ...
Journal of neurology 260 (5), 1286-1294, 2013
512013
Investigation of chimeric reads using the MinION
R White, C Pellefigues, F Ronchese, O Lamiable, D Eccles
F1000Research 6, 2017
442017
Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function
K Reddington, D Eccles, J O'Grady, DM Drown, LH Hansen, TK Nielsen, ...
GigaScience 9 (6), giaa053, 2020
422020
Mapping eQTLs in the Norfolk Island Genetic Isolate Identifies Candidate Genes for CVD Risk Traits
MC Benton, RA Lea, D Macartney-Coxson, MA Carless, HH Göring, ...
The American Journal of Human Genetics 93 (6), 1087-1099, 2013
372013
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