| phylostratr: a framework for phylostratigraphy Z Arendsee, J Li, U Singh, A Seetharam, K Dorman, ES Wurtele Bioinformatics 35 (19), 3617-3627, 2019 | 34 | 2019 |
| Foster thy young: enhanced prediction of orphan genes in assembled genomes J Li, U Singh, P Bhandary, J Campbell, Z Arendsee, AS Seetharam, ... Nucleic Acids Research 50 (7), e37-e37, 2022 | 24 | 2022 |
| pyrpipe: a Python package for RNA-Seq workflows U Singh, J Li, A Seetharam, ES Wurtele NAR genomics and bioinformatics 3 (2), lqab049, 2021 | 21 | 2021 |
| Landscape of the dark transcriptome revealed through re-mining massive RNA-Seq data J Li, U Singh, Z Arendsee, ES Wurtele Frontiers in Genetics 12, 722981, 2021 | 16 | 2021 |
| fagin: synteny-based phylostratigraphy and finer classification of young genes Z Arendsee, J Li, U Singh, P Bhandary, A Seetharam, ES Wurtele BMC bioinformatics 20, 1-14, 2019 | 16 | 2019 |
| Population structure and association mapping to detect QTL controlling tomato spotted wilt virus resistance in cultivated peanuts J Li, Y Tang, AL Jacobson, PM Dang, X Li, ML Wang, A Hagan, CY Chen The Crop Journal 6 (5), 516-526, 2018 | 11 | 2018 |
| Maximizing prediction of orphan genes in assembled genomes A Seetharam, U Singh, J Li, P Bhandary, Z Arendsee, ES Wurtele BioRxiv, 2019.12. 17.880294, 2019 | 8 | 2019 |
| Recycling RNA-seq data to identify candidate orphan genes for experimental analysis J Li, Z Arendsee, U Singh, ES Wurtele BioRxiv, 671263, 2019 | 5 | 2019 |
| synder: inferring genomic orthologs from synteny maps Z Arendsee, A Wilkey, U Singh, J Li, M Hur, ES Wurtele bioRxiv, 554501, 2019 | 3 | 2019 |
| Identification of potential genes for resistance to tomato spotted wilt and leaf spots in peanut (Arachis hypogaea l.) through GWAS analysis H Zhang, Y Chu, P Dang, Y Tang, J Li, T Jiang, JP Clevenger, ... | 2 | 2019 |
| Development of RNA-Seq library preparation method for highly degraded FFPE RNA and ultra-low RNA input E Star, N Karim, B DeGroen, M Salgado, D Wang, J Li, K Ilic, S Beaudoin, ... Cancer Research 84 (6_Supplement), 5781-5781, 2024 | | 2024 |
| A pan-tissue, pan-disease compendium of human orphan genes U Singh, JA Haltom, JW Guarnieri, J Li, A Seetharam, A Beheshti, ... bioRxiv, 2024.02. 21.581488, 2024 | | 2024 |
| Accuracy of functional gene community detection in Saccharomyces cerevisiae by maximizing Generalized Modularity Density P Singh, J Guo, J Li, U Singh, ES Wurtele, KE Bassler bioRxiv, 2022.12. 28.522153, 2022 | | 2022 |
| Predicting functions for novel maize orphan genes using network and clustering analysis J Li, P Bhandary, U Singh, A Seetharam, E Wurtele 61st Annual Maize Genetics Conference, 2019 | | 2019 |
| fagin: synteny-based phylostratigraphy and finer classification of young genes A Seetharam, Z Arendsee, J Li, U Singh, E Wurtele, P Bhandary | | 2019 |
| Association Mapping of SSR Markers to Tomato Spotted Wilt Virus Resistance in Cultivated Peanuts J Li Auburn University, 2016 | | 2016 |
