Arne Elofsson
Arne Elofsson
Science for Life Laboratory and department of Biochemistry and Biophysics, Stockholm University
Verified email at - Homepage
Cited by
Cited by
Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: the dense alignment surface method.
M Cserzö, E Wallin, I Simon, G von Heijne, A Elofsson
Protein engineering 10 (6), 673-676, 1997
3D-Jury: a simple approach to improve protein structure predictions
K Ginalski, A Elofsson, D Fischer, L Rychlewski
Bioinformatics 19 (8), 1015-1018, 2003
The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides
KD Tsirigos, C Peters, N Shu, L Käll, A Elofsson
Nucleic acids research 43 (W1), W401-W407, 2015
Can correct protein models be identified?
B Wallner, A Elofsson
Protein science 12 (5), 1073-1086, 2003
Detecting sequence signals in targeting peptides using deep learning
JJA Armenteros, M Salvatore, O Emanuelsson, O Winther, G Von Heijne, ...
Life science alliance 2 (5), 2019
TOPCONS: consensus prediction of membrane protein topology
A Bernsel, H Viklund, A Hennerdal, A Elofsson
Nucleic acids research 37 (suppl_2), W465-W468, 2009
Improved prediction of protein-protein interactions using AlphaFold2
P Bryant, G Pozzati, A Elofsson
Nature communications 13 (1), 1265, 2022
Structure is three to ten times more conserved than sequence—a study of structural response in protein cores
K Illergård, DH Ardell, A Elofsson
Proteins: Structure, Function, and Bioinformatics 77 (3), 499-508, 2009
MaxSub: an automated measure for the assessment of protein structure prediction quality
N Siew, A Elofsson, L Rychlewski, D Fischer
Bioinformatics 16 (9), 776-785, 2000
OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar
H Viklund, A Elofsson
Bioinformatics 24 (15), 1662-1668, 2008
What properties characterize the hub proteins of the protein-protein interaction network of Saccharomyces cerevisiae?
D Ekman, S Light, ÅK Björklund, A Elofsson
Genome biology 7, 1-13, 2006
Molecular recognition of a single sphingolipid species by a protein’s transmembrane domain
FX Contreras, AM Ernst, P Haberkant, P Björkholm, E Lindahl, B Gönen, ...
Nature 481 (7382), 525-529, 2012
A structural biology community assessment of AlphaFold2 applications
M Akdel, DEV Pires, EP Pardo, J Jänes, AO Zalevsky, B Mészáros, ...
Nature Structural & Molecular Biology 29 (11), 1056-1067, 2022
Pcons: A neural‐network–based consensus predictor that improves fold recognition
J Lundström, L Rychlewski, J Bujnicki, A Elofsson
Protein science 10 (11), 2354-2362, 2001
Prediction of membrane-protein topology from first principles
A Bernsel, H Viklund, J Falk, E Lindahl, G Von Heijne, A Elofsson
Proceedings of the National Academy of Sciences 105 (20), 7177-7181, 2008
Prediction of MHC class I binding peptides, using SVMHC
P Dönnes, A Elofsson
BMC bioinformatics 3, 1-8, 2002
DisProt 7.0: a major update of the database of disordered proteins
D Piovesan, F Tabaro, I Mičetić, M Necci, F Quaglia, CJ Oldfield, ...
Nucleic acids research 45 (D1), D219-D227, 2017
Membrane protein structure: prediction versus reality
A Elofsson, G Heijne
Annu. Rev. Biochem. 76 (1), 125-140, 2007
Best α‐helical transmembrane protein topology predictions are achieved using hidden Markov models and evolutionary information
H Viklund, A Elofsson
Protein Science 13 (7), 1908-1917, 2004
Expansion of protein domain repeats
ÅK Björklund, D Ekman, A Elofsson
PLoS computational biology 2 (8), e114, 2006
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