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Sahar AL Seesi
Sahar AL Seesi
Associate Professor, Computer Science, Southern Connecticut State University
Verified email at southernct.edu
Title
Cited by
Cited by
Year
Genomic and bioinformatic profiling of mutational neoepitopes reveals new rules to predict anticancer immunogenicity
F Duan, J Duitama, S Al Seesi, CM Ayres, SA Corcelli, AP Pawashe, ...
Journal of Experimental Medicine 211 (11), 2231-2248, 2014
4252014
Key parameters of tumor epitope immunogenicity revealed through a consortium approach improve neoantigen prediction
DK Wells, MM van Buuren, KK Dang, VM Hubbard-Lucey, KCF Sheehan, ...
Cell 183 (3), 818-834. e13, 2020
3312020
Bootstrap-based differential gene expression analysis for RNA-Seq data with and without replicates
S Al Seesi, YT Tiagueu, A Zelikovsky, II Măndoiu
BMC genomics 15, 1-10, 2014
632014
Minor spliceosome inactivation causes microcephaly, owing to cell cycle defects and death of self-amplifying radial glial cells
M Baumgartner, AM Olthof, GS Aquino, KC Hyatt, C Lemoine, K Drake, ...
Development 145 (17), dev166322, 2018
552018
Fast bootstrapping-based estimation of confidence intervals of expression levels and differential expression from RNA-Seq data
I Mandric, Y Temate-Tiagueu, T Shcheglova, S Al Seesi, A Zelikovsky, ...
Bioinformatics 33 (20), 3302-3304, 2017
492017
Determination of dosage compensation of the mammalian X chromosome by RNA-seq is dependent on analytical approach
NK Jue, MB Murphy, SD Kasowitz, SM Qureshi, CJ Obergfell, S Elsisi, ...
BMC genomics 14, 1-14, 2013
412013
An unbiased approach to defining bona fide cancer neoepitopes that elicit immune-mediated cancer rejection
CA Brennick, MM George, MM Moussa, AT Hagymasi, S Al Seesi, ...
The Journal of clinical investigation 131 (3), 2021
282021
Replication-dependent histone genes are actively transcribed in differentiating and aging retinal neurons
AR Banday, M Baumgartner, S Al Seesi, DKP Karunakaran, A Venkatesh, ...
Cell cycle 13 (16), 2526-2541, 2014
272014
An integer programming approach to novel transcript reconstruction from paired-end RNA-Seq reads
S Mangul, A Caciula, S Al Seesi, D Brinza, AR Banday, R Kanadia
Proceedings of the ACM Conference on Bioinformatics, Computational Biology …, 2012
262012
Minor splicing sn RNA s are enriched in the developing mouse CNS and are crucial for survival of differentiating retinal neurons
M Baumgartner, C Lemoine, S Al Seesi, DKP Karunakaran, N Sturrock, ...
Developmental Neurobiology 75 (9), 895-907, 2015
242015
Transcriptome assembly and quantification from Ion Torrent RNA-Seq data
S Mangul, A Caciula, S Al Seesi, D Brinza, I Mӑndoiu, A Zelikovsky
BMC genomics 15, 1-11, 2014
212014
Inferring metabolic pathway activity levels from RNA-Seq data
Y Temate-Tiagueu, SA Seesi, M Mathew, I Mandric, A Rodriguez, K Bean, ...
BMC genomics 17, 493-503, 2016
142016
Effects of maternal nutrition on the expression of genomic imprinted genes in ovine fetuses
J Duan, M Zhang, K Flock, SA Seesi, I Mandoiu, A Jones, E Johnson, ...
Epigenetics 13 (8), 793-807, 2018
122018
Network-based bioinformatics analysis of spatio-temporal RNA-Seq data reveals transcriptional programs underpinning normal and aberrant retinal development
DKP Karunakaran, S Al Seesi, AR Banday, M Baumgartner, A Olthof, ...
BMC genomics 17, 477-492, 2016
112016
Dosage compensation and gene expression of the X chromosome in sheep
J Duan, K Flock, N Jue, M Zhang, A Jones, SA Seesi, I Mandoiu, S Pillai, ...
G3: Genes, Genomes, Genetics 9 (1), 305-314, 2019
92019
Improved algorithms for parsing ESLTAGs: A grammatical model suitable for RNA pseudoknots
S Rajasekaran, S Al Seesi, RA Ammar
IEEE/ACM Transactions on Computational Biology and Bioinformatics 7 (4), 619-627, 2010
82010
Genomics-guided immunotherapy of human epithelial ovarian cancer
S Al Seesi, F Duan, II Mandoiu, PK Srivastava, A Kueck
Translational Cardiometabolic Genomic Medicine, 237-250, 2016
42016
Pseudoknot Identification through Learning TAGRNA
SA Seesi, S Rajasekaran, R Ammar
Pattern Recognition in Bioinformatics: Third IAPR International Conference …, 2008
42008
Transcriptome reconstruction and quantification from RNA sequencing Data
S Al Seesi, S Mangul, A Caciula, A Zelikovsky, I Măndoiu
Genome analysis: current procedures and applications, 39, 2014
32014
A user-centered design of a major and minor intron annotation database (MMIAD)
R ElKharboutly, K Gorman, W Eccles, SA Seesi
Proceedings of the International Conferences Interfaces and Human Computer …, 2020
22020
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