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Paolo Franchini
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Towards complete and error-free genome assemblies of all vertebrate species
A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ...
Nature 592 (7856), 737-746, 2021
20022021
Genomics and the origin of species
O Seehausen, RK Butlin, I Keller, CE Wagner, JW Boughman, ...
Nature Reviews Genetics 15 (3), 176-192, 2014
10962014
Phylogenomics uncovers early hybridization and adaptive loci shaping the radiation of Lake Tanganyika cichlid fishes
I Irisarri, P Singh, S Koblmüller, J Torres-Dowdall, F Henning, P Franchini, ...
Nature communications 9 (1), 3159, 2018
2062018
Giant lungfish genome elucidates the conquest of land by vertebrates
A Meyer, S Schloissnig, P Franchini, K Du, JM Woltering, I Irisarri, ...
Nature 590 (7845), 284-289, 2021
1832021
Parallel evolution of Nicaraguan crater lake cichlid fishes via non-parallel routes
KR Elmer, S Fan, H Kusche, M Luise Spreitzer, AF Kautt, P Franchini, ...
Nature communications 5 (1), 5168, 2014
1822014
Contrasting signatures of genomic divergence during sympatric speciation
AF Kautt, CF Kratochwil, A Nater, G Machado-Schiaffino, M Olave, ...
Nature 588 (7836), 106-111, 2020
1492020
The evolutionary history of Xiphophorus fish and their sexually selected sword: a genome‐wide approach using restriction site‐associated DNA sequencing
JC Jones, S Fan, P Franchini, M Schartl, A Meyer
Molecular ecology 22 (11), 2986-3001, 2013
1332013
Genomic architecture of ecologically divergent body shape in a pair of sympatric crater lake cichlid fishes
P Franchini, C Fruciano, ML Spreitzer, JC Jones, KR Elmer, F Henning, ...
Molecular ecology 23 (7), 1828-1845, 2014
1272014
Transcriptomics of morphological color change in polychromatic Midas cichlids
F Henning, JC Jones, P Franchini, A Meyer
Bmc Genomics 14, 1-14, 2013
1162013
Shaping development through mechanical strain: the transcriptional basis of diet‐induced phenotypic plasticity in a cichlid fish
HM Gunter, S Fan, F Xiong, P Franchini, C Fruciano, A Meyer
Molecular ecology 22 (17), 4516-4531, 2013
1152013
Parsing parallel evolution: ecological divergence and differential gene expression in the adaptive radiations of thick‐lipped M idas cichlid fishes from N icaragua
T Manousaki, PM Hull, H Kusche, G Machado‐Schiaffino, P Franchini, ...
Molecular ecology 22 (3), 650-669, 2013
1032013
Transcriptome characterization of the South African abalone Haliotis midae using sequencing-by-synthesis
P Franchini, M Van der Merwe, R Roodt-Wilding
BMC research notes 4, 1-11, 2011
942011
quaddRAD: A new high‐multiplexing and PCR duplicate removal ddRAD protocol produces novel evolutionary insights in a nonradiating cichlid lineage
P Franchini, D Monné Parera, AF Kautt, A Meyer
Molecular Ecology 26 (10), 2783-2795, 2017
872017
Genetic mapping of horizontal stripes in Lake Victoria cichlid fishes: benefits and pitfalls of using RAD markers for dense linkage mapping
F Henning, HJ Lee, P Franchini, A Meyer
Molecular Ecology 23 (21), 5224-5240, 2014
762014
Animal tracking meets migration genomics: transcriptomic analysis of a partially migratory bird species
P Franchini, I Irisarri, A Fudickar, A Schmidt, A Meyer, M Wikelski, ...
Molecular Ecology 26 (12), 3204-3216, 2017
672017
The gut microbial community of Midas cichlid fish in repeatedly evolved limnetic-benthic species pairs
P Franchini, C Fruciano, T Frickey, JC Jones, A Meyer
PloS one 9 (4), e95027, 2014
652014
The venomous cocktail of the vampire snail Colubraria reticulata (Mollusca, Gastropoda)
MV Modica, F Lombardo, P Franchini, M Oliverio
BMC genomics 16, 1-21, 2015
612015
Genetic linkage of distinct adaptive traits in sympatrically speciating crater lake cichlid fish
C Fruciano, P Franchini, V Kovacova, KR Elmer, F Henning, A Meyer
Nature communications 7 (1), 12736, 2016
582016
The mole genome reveals regulatory rearrangements associated with adaptive intersexuality
F M. Real, SA Haas, P Franchini, P Xiong, O Simakov, H Kuhl, R Schöpflin, ...
Science 370 (6513), 208-214, 2020
572020
Reduced gene flow at pericentromeric loci in a hybrid zone involving chromosomal races of the house mouse Mus musculus domesticus
P Franchini, P Colangelo, E Solano, E Capanna, E Verheyen, R Castiglia
Evolution 64 (7), 2020-2032, 2010
572010
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Articles 1–20