Rune Matthiesen

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Ana Sofia Leitão CarvalhoNOVA Medical School| Faculdade de Ciências Médicas NOVA University of LisbonVerified email at nms.unl.pt
Ole N. JensenProfessor, University of Southern DenmarkVerified email at bmb.sdu.dk
Felix ElortzaProteomics Platform ManagerVerified email at cicbiogune.es
Jakob BunkenborgScientistVerified email at bproteomics.com
Manuel S. RodriguezLaboratoire de Chimie de CoordinationVerified email at lcc-toulouse.fr
Antonio AmorimIPATIMUP, i3s, Faculty of Sciences University of PortoVerified email at ipatimup.pt
Falcon-PerezCIC bioGUNEVerified email at cicbiogune.es
waltraud x schulzeVerified email at uni-hohenheim.de
henrik molinaThe Rockefeller UniversityVerified email at rockefeller.edu
Carlos Miguel FarinhaAssociate Professor of BiochemistryVerified email at fc.ul.pt
Ana * AransayGenome Analyses Platform, CIC bioGUNEVerified email at cicbiogune.es
Javier Conde VancellsProduct Marketing Specialist, AbcamVerified email at abcam.com
Margarida AmaralProfessor of Molecular Biology, Faculty of Sciences, University of LisboaVerified email at fc.ul.pt
Andre O FalcaoProfessor of Computer Science, Univ. Lisboa, Faculdade de Ciências - Dept de InformáticaVerified email at di.fc.ul.pt
Akhilesh Pandey, M.D., Ph.D.Professor, Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MinnesotaVerified email at mayo.edu
Luísa AzevedoPhD, Senior researcher at ICBAS and UMIB/ICBAS, University of PortoVerified email at icbas.up.pt
fabienne ailletFundacíon InbiomedVerified email at inbiomed.org
João CarneiroCIIMAR - Interdisciplinary Centre of Marine and Environmental ResearchVerified email at ciimar.up.pt
Gorka PrietoProfessor (UPV/EHU)Verified email at ehu.es
Manel EstellerDirector, Josep Carreras Leukaemia Research Institute. University of Barcelona and ICREAVerified email at carrerasresearch.org

Rune Matthiesen

Principal investigator, NOVA Medical School | Faculdade de Ciências Médicas Universidade Nova de

Verified email at nms.unl.pt - Homepage

Global MS-based drug profilling clinical proteomics MS biomarkers data mining and post translational modifications


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Characterization and comprehensive proteome profiling of exosomes secreted by hepatocytes J Conde-Vancells, E Rodriguez-Suarez, N Embade, D Gil, R Matthiesen, ... Journal of proteome research 7 (12), 5157-5166, 2008	727	2008
Loss of the glycine N‐methyltransferase gene leads to steatosis and hepatocellular carcinoma in mice ML Martínez‐Chantar, M Vázquez‐Chantada, U Ariz, N Martínez, ... Hepatology 47 (4), 1191-1199, 2008	355	2008
Stable isotope labeling of Arabidopsis thaliana cells and quantitative proteomics by mass spectrometry* S A Gruhler, WX Schulze, R Matthiesen, M Mann, ON Jensen Molecular & Cellular Proteomics 4 (11), 1697-1709, 2005	279	2005
Quantitative proteomic analysis of post-translational modifications of human histones HC Beck, EC Nielsen, R Matthiesen, LH Jensen, M Sehested, P Finn, ... Molecular & Cellular Proteomics 5 (7), 1314-1325, 2006	236	2006
Overview on techniques in cluster analysis I Frades, R Matthiesen Bioinformatics methods in clinical research, 81-107, 2010	214	2010
VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins R Matthiesen, MB Trelle, P Højrup, J Bunkenborg, ON Jensen Journal of proteome research 4 (6), 2338-2347, 2005	159	2005
Differential expression of α-2, 3-sialyltransferases and α-1, 3/4-fucosyltransferases regulates the levels of sialyl Lewis a and sialyl Lewis x in gastrointestinal carcinoma cells AS Carvalho, A Harduin-Lepers, A Magalhaes, E Machado, N Mendes, ... The international journal of biochemistry & cell biology 42 (1), 80-89, 2010	155	2010
Human Spermatogenic Failure Purges Deleterious Mutation Load from the Autosomes and Both Sex Chromosomes, including the Gene DMRT1 AM Lopes, KI Aston, E Thompson, F Carvalho, J Gonçalves, N Huang, ... PLoS genetics 9 (3), e1003349, 2013	149	2013
Down‐regulation of the strawberry Bet v 1‐homologous allergen in concert with the flavonoid biosynthesis pathway in colorless strawberry mutant K Hjernø, R Alm, B Canbäck, R Matthiesen, K Trajkovski, L Björk, ... Proteomics 6 (5), 1574-1587, 2006	137	2006
An enzymatic deglycosylation scheme enabling identification of core fucosylated N-glycans and O-glycosylation site mapping of human plasma proteins P Hägglund, R Matthiesen, F Elortza, P Højrup, P Roepstorff, ON Jensen, ... Journal of proteome research 6 (8), 3021-3031, 2007	130	2007
Comprehensive comparison of collision induced dissociation and electron transfer dissociation H Molina, R Matthiesen, K Kandasamy, A Pandey Analytical chemistry 80 (13), 4825-4835, 2008	121	2008
Identification of species by multiplex analysis of variable-length sequences F Pereira, J Carneiro, R Matthiesen, B van Asch, N Pinto, L Gusmao, ... Nucleic acids research 38 (22), e203-e203, 2010	120	2010
LAMP2A regulates the loading of proteins into exosomes JV Ferreira, A da Rosa Soares, J Ramalho, C Máximo Carvalho, ... Science advances 8 (12), eabm1140, 2022	108	2022
Integrative analysis of the ubiquitin proteome isolated using Tandem Ubiquitin Binding Entities (TUBEs) F Lopitz-Otsoa, E Rodriguez-Suarez, F Aillet, J Casado-Vela, V Lang, ... Journal of proteomics 75 (10), 2998-3014, 2012	105	2012
Profiling of lung microbiota discloses differences in adenocarcinoma and squamous cell carcinoma S Gomes, B Cavadas, JC Ferreira, PI Marques, C Monteiro, M Sucena, ... Scientific reports 9 (1), 12838, 2019	102	2019
Gains, losses and changes of function after gene duplication: study of the metallothionein family A Moleirinho, J Carneiro, R Matthiesen, RM Silva, A Amorim, L Azevedo PloS one 6 (4), e18487, 2011	102	2011
Methods, algorithms and tools in computational proteomics: a practical point of view R Matthiesen Proteomics 7 (16), 2815-2832, 2007	99	2007
Integrative genomic signatures of hepatocellular carcinoma derived from nonalcoholic Fatty liver disease I Frades, E Andreasson, JM Mato, E Alexandersson, R Matthiesen, ... PLoS one 10 (5), e0124544, 2015	79	2015
Mass spectrometry data analysis in proteomics R Matthiesen Humana Press, 2007	77	2007
Synthesis of sucrose laurate using a new alkaline protease NR Pedersen, R Wimmer, R Matthiesen, LH Pedersen, A Gessesse Tetrahedron: Asymmetry 14 (6), 667-673, 2003	77	2003

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