Kristian Vlahovicek
Kristian Vlahovicek
University of Zagreb - Faculty of Science - Department of Biology - Bioinformatics Group
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Cited by
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Histone modification levels are predictive for gene expression
R Karlić, HR Chung, J Lasserre, K Vlahoviček, M Vingron
Proceedings of the National Academy of Sciences 107 (7), 2926-2931, 2010
Cell-of-origin chromatin organization shapes the mutational landscape of cancer
P Polak, R Karlić, A Koren, R Thurman, R Sandstrom, MS Lawrence, ...
Nature 518 (7539), 360-364, 2015
A retrotransposon-driven dicer isoform directs endogenous small interfering RNA production in mouse oocytes
M Flemr, R Malik, V Franke, J Nejepinska, R Sedlacek, K Vlahovicek, ...
Cell 155 (4), 807-816, 2013
Genomation: a toolkit to summarize, annotate and visualize genomic intervals
A Akalin, V Franke, K Vlahoviček, CE Mason, D Schübeler
Bioinformatics 31 (7), 1127-1129, 2015
Prediction of protein–protein interaction sites in sequences and 3D structures by random forests
M Šikić, S Tomić, K Vlahoviček
PLoS computational biology 5 (1), e1000278, 2009
PSAIA–protein structure and interaction analyzer
J Mihel, M Šikić, S Tomić, B Jeren, K Vlahoviček
BMC structural biology 8, 1-11, 2008
Rod models of DNA: sequence-dependent anisotropic elastic modelling of local bending phenomena
MG Munteanu, K Vlahovicek, S Parthasarathy, I Simon, S Pongor
Trends in biochemical sciences 23 (9), 341-347, 1998
DNA analysis servers: plot. it, bend. it, model. it and IS
K Vlahovicˇek, L Kajan, S Pongor
Nucleic Acids Research 31 (13), 3686-3687, 2003
Comparison of codon usage measures and their applicability in prediction of microbial gene expressivity
F Supek, K Vlahoviček
BMC bioinformatics 6, 1-15, 2005
The first murine zygotic transcription is promiscuous and uncoupled from splicing and 3′ processing
K Abe, R Yamamoto, V Franke, M Cao, Y Suzuki, MG Suzuki, ...
The EMBO journal 34 (11), 1523-1537, 2015
Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes
V Franke, S Ganesh, R Karlic, R Malik, J Pasulka, F Horvat, M Kuzman, ...
Genome research 27 (8), 1384-1394, 2017
INCA: synonymous codon usage analysis and clustering by means of self-organizing map
F Supek, K Vlahoviček
Bioinformatics 20 (14), 2329-2330, 2004
Spatially clustered loci with multiple enhancers are frequent targets of HIV-1 integration
B Lucic, HC Chen, M Kuzman, E Zorita, J Wegner, V Minneker, W Wang, ...
Nature communications 10 (1), 4059, 2019
Translational selection is ubiquitous in prokaryotes
F Supek, N Škunca, J Repar, K Vlahoviček, T Šmuc
PLoS genetics 6 (6), e1001004, 2010
Demosponge EST sequencing reveals a complex genetic toolkit of the simplest metazoans
M Harcet, M Roller, H Ćetković, D Perina, M Wiens, WEG Müller, ...
Molecular biology and evolution 27 (12), 2747-2756, 2010
Long non-coding RNA exchange during the oocyte-to-embryo transition in mice
R Karlic, S Ganesh, V Franke, E Svobodova, J Urbanova, Y Suzuki, F Aoki, ...
Dna research 24 (2), 129-141, 2017
Environmental shaping of codon usage and functional adaptation across microbial communities
M Roller, V Lucić, I Nagy, T Perica, K Vlahoviček
Nucleic acids research 41 (19), 8842-8852, 2013
Highly reactive cysteine residues are part of the substrate binding site of mammalian dipeptidyl peptidases III
M Abramić, Š Šimaga, M Osmak, L Čičin-Šain, B Vukelić, K Vlahoviček, ...
The international journal of biochemistry & cell biology 36 (3), 434-446, 2004
Prediction of protein functional domains from sequences using artificial neural networks
J Murvai, K Vlahoviček, C Szepesvári, S Pongor
Genome research 11 (8), 1410-1417, 2001
Common aberrations from the normal human plasma N-glycan profile.
M Pucic, S Pinto, M Novokmet, A Knezevic, O Gornik, O Polasek, ...
Glycobiology 20 (8), 970-975, 2010
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