|An integrated encyclopedia of DNA elements in the human genome|
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
|Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project|
Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ...
nature 447 (7146), 799-816, 2007
|A user's guide to the encyclopedia of DNA elements (ENCODE)|
ENCODE Project Consortium
PLoS biology 9 (4), e1001046, 2011
|Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation|
S Shivaswamy, A Bhinge, Y Zhao, S Jones, M Hirst, VR Iyer
PLoS biology 6 (3), e65, 2008
|Wide-ranging functions of E2F4 in transcriptional activation and repression revealed by genome-wide analysis|
BK Lee, AA Bhinge, VR Iyer
Nucleic acids research 39 (9), 3558-3573, 2011
|Mapping DNA-protein interactions in large genomes by sequence tag analysis of genomic enrichment|
J Kim, AA Bhinge, XC Morgan, VR Iyer
Nature Methods 2 (1), 47-53, 2005
|Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells|
BK Lee, AA Bhinge, A Battenhouse, RM McDaniell, Z Liu, L Song, Y Ni, ...
Genome research 22 (1), 9-24, 2012
|Genetic correction of SOD1 mutant iPSCs reveals ERK and JNK activated AP1 as a driver of neurodegeneration in amyotrophic lateral sclerosis|
A Bhinge, SC Namboori, X Zhang, AMJ VanDongen, LW Stanton
Stem cell reports 8 (4), 856-869, 2017
|Mapping the chromosomal targets of STAT1 by Sequence Tag Analysis of Genomic Enrichment (STAGE)|
AA Bhinge, J Kim, GM Euskirchen, M Snyder, VR Iyer
Genome research 17 (6), 910-916, 2007
|NeuO: a fluorescent chemical probe for live neuron labeling|
JC Er, C Leong, CL Teoh, Q Yuan, P Merchant, M Dunn, D Sulzer, ...
Angewandte Chemie International Edition 54 (8), 2442-2446, 2015
|A procedure for detection and quantitation of cavity volumes in proteins: application to measure the strength of the hydrophobic driving force in protein folding|
S Chakravarty, A Bhinge, R Varadarajan
Journal of Biological Chemistry 277 (35), 31345-31353, 2002
|MiR-375 is essential for human spinal motor neuron development and may be involved in motor neuron degeneration|
A Bhinge, SC Namboori, A Bithell, C Soldati, NJ Buckley, LW Stanton
Stem Cells 34 (1), 124-134, 2016
|Mi R‐135b is a direct PAX 6 target and specifies human neuroectoderm by inhibiting TGF‐β/BMP signaling|
A Bhinge, J Poschmann, SC Namboori, X Tian, S Jia Hui Loh, A Traczyk, ...
The EMBO journal 33 (11), 1271-1283, 2014
|A Myc–microRNA network promotes exit from quiescence by suppressing the interferon response and cell-cycle arrest genes|
D Polioudakis, AA Bhinge, PJ Killion, BK Lee, NS Abell, VR Iyer
Nucleic acids research 41 (4), 2239-2254, 2013
|Lysine: Is it worth more?|
D Datta, A Bhinge, V Chandran
Cytotechnology 36, 3-32, 2001
|Accurate detection of protein: ligand binding sites using molecular dynamics simulations|
A Bhinge, P Chakrabarti, K Uthanumallian, K Bajaj, K Chakraborty, ...
Structure 12 (11), 1989-1999, 2004
|Single-cell gene expression analysis reveals regulators of distinct cell subpopulations among developing human neurons|
J Wang, P Jenjaroenpun, A Bhinge, VE Angarica, A Del Sol, I Nookaew, ...
Genome research 27 (11), 1783-1794, 2017
|Epigenetics of human T cells during the G0→ G1 transition|
AE Smith, C Chronis, M Christodoulakis, SJ Orr, NC Lea, NA Twine, ...
Genome research 19 (8), 1325-1337, 2009
|Cyclin-dependent kinase-dependent phosphorylation of Sox2 at serine 39 regulates neurogenesis|
S Lim, A Bhinge, S Bragado Alonso, I Aksoy, J Aprea, CF Cheok, ...
Molecular and Cellular Biology 37 (16), e00201-17, 2017
|A genome-wide screen for genetic variants that modify the recruitment of REST to its target genes|
R Johnson, N Richter, GK Bogu, A Bhinge, SW Teng, SH Choo, ...
PLoS genetics 8 (4), e1002624, 2012