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Jiří Filipovič
Jiří Filipovič
Research group leader, Institute of Computer Science, Masaryk University
Verified email at mail.muni.cz - Homepage
Title
Cited by
Cited by
Year
Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport
J Stourac, O Vavra, P Kokkonen, J Filipovic, G Pinto, J Brezovsky, ...
Nucleic acids research 47 (W1), W414-W422, 2019
1942019
Optimizing CUDA code by kernel fusion: application on BLAS
J Filipovič, M Madzin, J Fousek, L Matyska
The Journal of Supercomputing 71 (10), 3934-3957, 2015
972015
CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels
O Vavra, J Filipovic, J Plhak, D Bednar, SM Marques, J Brezovsky, ...
Bioinformatics 35 (23), 4986-4993, 2019
702019
CaverDock: a novel method for the fast analysis of ligand transport
J Filipovič, O Vávra, J Plhák, D Bednář, SM Marques, J Brezovský, ...
IEEE/ACM Transactions on Computational Biology and Bioinformatics 17 (5 …, 2019
492019
A benchmark set of highly-efficient CUDA and OpenCL kernels and its dynamic autotuning with Kernel Tuning Toolkit
F Petrovič, D Střelák, J Hozzová, J Ol’ha, R Trembecký, S Benkner, ...
Future Generation Computer Systems 108, 161-177, 2020
462020
Automatic fusions of CUDA-GPU kernels for parallel map
J Fousek, J Filipovič, M Madzin
ACM SIGARCH Computer Architecture News 39 (4), 98-99, 2011
402011
GPU Acceleration of equations assembly in finite elements method-preliminary results
J Filipovic, I Peterlik, J Fousek
SAAHPC: Symposium on Application Accelerators in HPC, 2009
332009
Advances in xmipp for cryo–electron microscopy: From xmipp to scipion
D Strelak, A Jiménez-Moreno, JL Vilas, E Ramírez-Aportela, ...
Molecules 26 (20), 6224, 2021
312021
Estimating conformational landscapes from Cryo-EM particles by 3D Zernike polynomials
D Herreros, RR Lederman, JM Krieger, A Jiménez-Moreno, M Martínez, ...
Nature Communications 14 (1), 154, 2023
292023
Distributed construction of configuration spaces for real-time haptic deformation modeling
I Peterlik, J Filipovic
IEEE Transactions on Industrial Electronics 58 (8), 3205-3212, 2009
282009
Fast screening of inhibitor binding/unbinding using novel software tool CaverDock
GP Pinto, O Vavra, J Filipovic, J Stourac, D Bednar, J Damborsky
Frontiers in Chemistry 7, 709, 2019
252019
Autotuning of OpenCL kernels with global optimizations
J Filipovič, F Petrovič, S Benkner
Proceedings of the 1st workshop on autotuning and aDaptivity approaches for …, 2017
252017
On bias, variance, overfitting, gold standard and consensus in single-particle analysis by cryo-electron microscopy
COS Sorzano, A Jiménez-Moreno, D Maluenda, M Martínez, ...
Acta Crystallographica Section D: Structural Biology 78 (4), 410-423, 2022
212022
Approximating deformation fields for the analysis of continuous heterogeneity of biological macromolecules by 3D Zernike polynomials
D Herreros, RR Lederman, J Krieger, A Jiménez-Moreno, M Martínez, ...
IUCrJ 8 (6), 992-1005, 2021
192021
DeepAlign, a 3D alignment method based on regionalized deep learning for Cryo-EM
A Jiménez-Moreno, D Střelák, J Filipovič, JM Carazo, COS Sorzano
Journal of Structural Biology 213 (2), 107712, 2021
192021
A GPU acceleration of 3-D Fourier reconstruction in cryo-EM
D Střelák, CÓS Sorzano, JM Carazo, J Filipovič
The International Journal of High Performance Computing Applications 33 (5 …, 2019
192019
OpenCL kernel fusion for GPU, Xeon Phi and CPU
J Filipovic, S Benkner
2015 27th International Symposium on Computer Architecture and High …, 2015
182015
Performance analysis and autotuning setup of the cuFFT library
D Střelák, J Filipovič
Proceedings of the 2nd Workshop on AutotuniNg and aDaptivity AppRoaches for …, 2018
162018
Using hardware performance counters to speed up autotuning convergence on GPUs
J Filipovič, J Hozzová, A Nezarat, J Oľha, F Petrovič
Journal of Parallel and Distributed Computing 160, 16-35, 2021
152021
Screening of world approved drugs against highly dynamical spike glycoprotein of SARS-CoV-2 using CaverDock and machine learning
GP Pinto, O Vavra, SM Marques, J Filipovic, D Bednar, J Damborsky
Computational and Structural Biotechnology Journal 19, 3187-3197, 2021
152021
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