Yasushi Kondo
Yasushi Kondo
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A molecular assembly phase transition and kinetic proofreading modulate Ras activation by SOS
WYC Huang, S Alvarez, Y Kondo, YK Lee, JK Chung, HYM Lam, ...
Science 363 (6431), 1098-1103, 2019
Crystal structure of human U1 snRNP, a small nuclear ribonucleoprotein particle, reveals the mechanism of 5′ splice site recognition
Y Kondo, C Oubridge, AMM van Roon, K Nagai
elife 4, e04986, 2015
Cryo-EM structure of a dimeric B-Raf: 14-3-3 complex reveals asymmetry in the active sites of B-Raf kinases
Y Kondo, J Ognjenović, S Banerjee, D Karandur, A Merk, K Kulhanek, ...
Science 366 (6461), 109-115, 2019
Deconstruction of the Ras switching cycle through saturation mutagenesis
P Bandaru, NH Shah, M Bhattacharyya, JP Barton, Y Kondo, JC Cofsky, ...
Elife 6, e27810, 2017
Evolution of oligomeric state through allosteric pathways that mimic ligand binding
T Perica, Y Kondo, SP Tiwari, SH McLaughlin, KR Kemplen, X Zhang, ...
Science 346 (6216), 1254346, 2014
The interdependent activation of Son-of-Sevenless and Ras
P Bandaru, Y Kondo, J Kuriyan
Cold Spring Harbor perspectives in medicine 9 (2), a031534, 2019
Subunit disassembly and inhibition of TNFα by a semi-synthetic bicyclic peptide
S Luzi, Y Kondo, E Bernard, LKJ Stadler, M Vaysburd, G Winter, ...
Protein Engineering, Design & Selection 28 (2), 45-52, 2015
A Histidine pH sensor regulates activation of the Ras-specific guanine nucleotide exchange factor RasGRP1
Y Vercoulen, Y Kondo, JS Iwig, AB Janssen, KA White, M Amini, ...
Elife 6, e29002, 2017
Assembly and dynamics of the U4/U6 di-snRNP by single-molecule FRET
JW Hardin, C Warnasooriya, Y Kondo, K Nagai, D Rueda
Nucleic acids research 43 (22), 10963-10974, 2015
A two-component protein condensate of the EGFR cytoplasmic tail and Grb2 regulates Ras activation by SOS at the membrane
CW Lin, LM Nocka, BL Stinger, JB DeGrandchamp, LJN Lew, S Alvarez, ...
Proceedings of the National Academy of Sciences 119 (19), e2122531119, 2022
Chemical synthesis of U1 snRNA derivatives
A Ohkubo, Y Kondo, M Suzuki, H Kobayashi, T Kanamori, Y Masaki, ...
Organic letters 15 (17), 4386-4389, 2013
Re-refinement of the spliceosomal U4 snRNP core-domain structure
J Li, AK Leung, Y Kondo, C Oubridge, K Nagai
Acta Crystallographica Section D: Structural Biology 72 (1), 131-146, 2016
Relating cellular signaling timescales to single-molecule kinetics: A first-passage time analysis of Ras activation by SOS
WYC Huang, S Alvarez, Y Kondo, J Kuriyan, JT Groves
Proceedings of the National Academy of Sciences 118 (45), e2103598118, 2021
Use of RNA tertiary interaction modules for the crystallisation of the spliceosomal snRNP core domain
AKW Leung, C Kambach, Y Kondo, M Kampmann, M Jinek, K Nagai
Journal of molecular biology 402 (1), 154-164, 2010
New insights into Raf regulation from structural analyses
Y Kondo, JW Paul III, S Subramaniam, J Kuriyan
Current Opinion in Structural Biology 71, 223-231, 2021
A multi-reservoir extruder for time-resolved serial protein crystallography and compound screening at X-ray free-electron lasers
M Wranik, MW Kepa, EV Beale, D James, Q Bertrand, T Weinert, A Furrer, ...
Nature Communications 14 (1), 7956, 2023
A two-component protein condensate of EGFR and Grb2 regulates Ras activation at the membrane
CW Lin, LM Nocka, B Stinger, J DeGrandchamp, N Lew, S Alvarez, ...
BioRxiv, 2021.12. 12.472247, 2021
Engineering crystal packing in RNA-protein complexes II: a historical perspective from the structural studies of the spliceosome
AKW Leung, Y Kondo, DAP Krummel, J Li, SR Price, AMM van Roon
Crystals 11 (8), 948, 2021
Molecular timing of membrane signaling reactions
WYC Huang, S Alvarez, YK Lee, Y Kondo, JK Chung, HYM Lam, ...
Biophysical Journal 114 (3), 202a, 2018
Photochemical affinity switches to resolve ligand dissociation from a G protein-coupled receptor by time-resolved serial crystallography
J Standfuss, H Glover, T Sassmannshausen, Q Bertrand, M Trabuco, ...
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