| Introducing improved structural properties and salt dependence into a coarse-grained model of DNA BEK Snodin, F Randisi, M Mosayebi, P Šulc, JS Schreck, F Romano, ... The Journal of chemical physics 142 (23), 2015 | 350 | 2015 |
| Coarse-graining DNA for simulations of DNA nanotechnology JPK Doye, TE Ouldridge, AA Louis, F Romano, P Šulc, C Matek, ... Physical Chemistry Chemical Physics 15 (47), 20395-20414, 2013 | 232 | 2013 |
| Learning retrosynthetic planning through simulated experience JS Schreck, CW Coley, KJM Bishop ACS central science 5 (6), 970-981, 2019 | 178 | 2019 |
| Coarse-grained modelling of the structural properties of DNA origami BEK Snodin, JS Schreck, F Romano, AA Louis, JPK Doye Nucleic acids research 47 (3), 1585-1597, 2019 | 87 | 2019 |
| A kinetic study of amyloid formation: fibril growth and length distributions JS Schreck, JM Yuan The Journal of Physical Chemistry B 117 (21), 6574-6583, 2013 | 73 | 2013 |
| DNA hairpins destabilize duplexes primarily by promoting melting rather than by inhibiting hybridization JS Schreck, TE Ouldridge, F Romano, P Šulc, LP Shaw, AA Louis, ... Nucleic acids research 43 (13), 6181-6190, 2015 | 71 | 2015 |
| Design principles for rapid folding of knotted DNA nanostructures V Kočar, JS Schreck, S Čeru, H Gradišar, N Bašić, T Pisanski, JPK Doye, ... Nature communications 7 (1), 10803, 2016 | 60 | 2016 |
| Characterizing the motion of jointed DNA nanostructures using a coarse-grained model R Sharma, JS Schreck, F Romano, AA Louis, JPK Doye ACS nano 11 (12), 12426-12435, 2017 | 59 | 2017 |
| Characterizing DNA star-tile-based nanostructures using a coarse-grained model JS Schreck, F Romano, MH Zimmer, AA Louis, JPK Doye ACS nano 10 (4), 4236-4247, 2016 | 42 | 2016 |
| DNA bipedal motor walking dynamics: an experimental and theoretical study of the dependency on step size DC Khara, JS Schreck, TE Tomov, Y Berger, TE Ouldridge, JPK Doye, ... Nucleic acids research 46 (3), 1553-1561, 2018 | 40 | 2018 |
| Self-assembly of two-dimensional binary quasicrystals: A possible route to a DNA quasicrystal A Reinhardt, JS Schreck, F Romano, JPK Doye Journal of Physics: Condensed Matter 29 (1), 014006, 2016 | 33 | 2016 |
| Architectural energetics for tumuli construction: The case of the medieval Chungul Kurgan on the Eurasian steppe Jordan Pickett, John S. Schreck, Renata Holod, Yuriy Rassamakin, Oleksandr ... Journal of Archaeological Science 75, 101-114, 2016 | 28 | 2016 |
| The oxDNA coarse-grained model as a tool to simulate DNA origami JPK Doye, H Fowler, D Prešern, J Bohlin, L Rovigatti, F Romano, P Šulc, ... DNA and RNA Origami: Methods and Protocols, 93-112, 2023 | 26 | 2023 |
| Generative and interpretable machine learning for aptamer design and analysis of in vitro sequence selection A Di Gioacchino, J Procyk, M Molari, JS Schreck, Y Zhou, Y Liu, ... PLoS computational biology 18 (9), e1010561, 2022 | 26 | 2022 |
| Understanding DNA interactions in crowded environments with a coarse-grained model F Hong, JS Schreck, P Šulc Nucleic acids research 48 (19), 10726-10738, 2020 | 26 | 2020 |
| Investigating the effects of molecular crowding on the kinetics of protein aggregation JS Schreck, J Bridstrup, JM Yuan The Journal of Physical Chemistry B 124 (44), 9829-9839, 2020 | 26 | 2020 |
| Characterizing the bending and flexibility induced by bulges in DNA duplexes JS Schreck, TE Ouldridge, F Romano, AA Louis, JPK Doye The Journal of chemical physics 142 (16), 2015 | 26 | 2015 |
| Machine learning for improving surface-layer-flux estimates T McCandless, DJ Gagne, B Kosović, SE Haupt, B Yang, C Becker, ... Boundary-Layer Meteorology 185 (2), 199-228, 2022 | 23 | 2022 |
| Exactly solvable model for helix-coil-sheet transitions in protein systems JS Schreck, JM Yuan Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 81 (6 …, 2010 | 22 | 2010 |
| Multi-scale coarse-graining for the study of assembly pathways in DNA-brick self-assembly P Fonseca, F Romano, JS Schreck, TE Ouldridge, JPK Doye, AA Louis The Journal of Chemical Physics 148 (13), 2018 | 20 | 2018 |
Jonathan DoyeDepartment of Chemistry, University of OxfordVerified email at chem.ox.ac.uk
