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Guruprasad Ananda
Guruprasad Ananda
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Galaxy: a web‐based genome analysis tool for experimentalists
D Blankenberg, GV Kuster, N Coraor, G Ananda, R Lazarus, M Mangan, ...
Current protocols in molecular biology 89 (1), 19.10. 1-19.10. 21, 2010
17892010
The origin, evolution, and functional impact of short insertion–deletion variants identified in 179 human genomes
SB Montgomery, DL Goode, E Kvikstad, CA Albers, ZD Zhang, XJ Mu, ...
Genome research 23 (5), 749-761, 2013
2732013
Accurate typing of short tandem repeats from genome-wide sequencing data and its applications
A Fungtammasan, G Ananda, SE Hile, MSW Su, C Sun, R Harris, ...
Genome research 25 (5), 736-749, 2015
1062015
Windshield splatter analysis with the Galaxy metagenomic pipeline
SK Pond, S Wadhawan, F Chiaromonte, G Ananda, WY Chung, J Taylor, ...
Genome research 19 (11), 2144-2153, 2009
1042009
Distinct mutational behaviors differentiate short tandem repeats from microsatellites in the human genome
G Ananda, E Walsh, KD Jacob, M Krasilnikova, KA Eckert, F Chiaromonte, ...
Genome biology and evolution 5 (3), 606-620, 2013
812013
Astrocyte support for oligodendrocyte differentiation can be conveyed via extracellular vesicles but diminishes with age
CM Willis, AM Nicaise, ER Bongarzone, M Givogri, CR Reiter, O Heintz, ...
Scientific reports 10 (1), 828, 2020
662020
HELLS and PRDM9 form a pioneer complex to open chromatin at meiotic recombination hot spots
C Spruce, S Dlamini, G Ananda, N Bronkema, H Tian, K Paigen, ...
Genes & development 34 (5-6), 398-412, 2020
652020
Ancestry-driven recalibration of tumor mutational burden and disparate clinical outcomes in response to immune checkpoint inhibitors
AH Nassar, E Adib, S Abou Alaiwi, T El Zarif, S Groha, EW Akl, PV Nuzzo, ...
Cancer Cell 40 (10), 1161-1172. e5, 2022
622022
& Taylor, J.(2010). Galaxy: a web‐based genome analysis tool for experimentalists
D Blankenberg, GV Kuster, N Coraor, G Ananda, R Lazarus, M Mangan
Current protocols in molecular biology, 19-10, 22
6222
The genome of C57BL/6J “Eve”, the mother of the laboratory mouse genome reference strain
VK Sarsani, N Raghupathy, IT Fiddes, J Armstrong, F Thibaud-Nissen, ...
G3: Genes, Genomes, Genetics 9 (6), 1795-1805, 2019
612019
Exome sequencing reveals pathogenic mutations in 91 strains of mice with Mendelian disorders
H Fairfield, A Srivastava, G Ananda, R Liu, M Kircher, A Lakshminarayana, ...
Genome research 25 (7), 948-957, 2015
602015
A genome-wide view of mutation rate co-variation using multivariate analyses
G Ananda, F Chiaromonte, KD Makova
Genome biology 12, 1-18, 2011
432011
Molecular genetic analysis of ovarian Brenner tumors and associated mucinous epithelial neoplasms: high variant concordance and identification of mutually exclusive RAS driver …
LJ Tafe, KE Muller, G Ananda, T Mitchell, V Spotlow, SE Patterson, ...
The American Journal of Pathology 186 (3), 671-677, 2016
402016
Genomic data analysis workflows for tumors from patient-derived xenografts (PDXs): challenges and guidelines
XY Woo, A Srivastava, JH Graber, V Yadav, VK Sarsani, A Simons, ...
BMC medical genomics 12, 1-19, 2019
362019
Microsatellite interruptions stabilize primate genomes and exist as population-specific single nucleotide polymorphisms within individual human genomes
G Ananda, SE Hile, A Breski, Y Wang, Y Kelkar, KD Makova, KA Eckert
PLoS genetics 10 (7), e1004498, 2014
362014
Transcriptomic stratification of late-onset Alzheimer's cases reveals novel genetic modifiers of disease pathology
N Milind, C Preuss, A Haber, G Ananda, S Mukherjee, C John, S Shapley, ...
PLoS genetics 16 (6), e1008775, 2020
352020
Segmenting the human genome based on states of neutral genetic divergence
P Kuruppumullage Don, G Ananda, F Chiaromonte, KD Makova
Proceedings of the National Academy of Sciences 110 (36), 14699-14704, 2013
342013
Development and validation of the JAX Cancer Treatment Profile™ for detection of clinically actionable mutations in solid tumors
G Ananda, S Mockus, M Lundquist, V Spotlow, A Simons, T Mitchell, ...
Experimental and molecular pathology 98 (1), 106-112, 2015
332015
Discovery of a new predominant cytosine DNA modification that is linked to gene expression in malaria parasites
E Hammam, G Ananda, A Sinha, C Scheidig-Benatar, M Bohec, ...
Nucleic acids research 48 (1), 184-199, 2020
322020
Somatic gene mutation analysis of triple negative breast cancers
JL Dillon, SM Mockus, G Ananda, V Spotlow, WA Wells, GJ Tsongalis, ...
The Breast 29, 202-207, 2016
312016
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